Factsheet for Bra029690.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
plasma membrane 1
extracellular 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35976	Canola	extracellular	95.57	92.16
AT3G07970.1	Thale cress	extracellular	85.96	79.5
Bra001279.1-P	Field mustard	extracellular	82.02	76.2
VIT_13s0064g00760.t01	Wine grape	cytosol	46.8	57.23
KRH32949	Soybean	extracellular	56.16	52.05
KRH13966	Soybean	extracellular	55.42	51.25
KRH23942	Soybean	extracellular	55.42	51.14
KRH39858	Soybean	extracellular	54.68	50.34
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	47.04	48.11
VIT_13s0064g00750.t01	Wine grape	cytosol	53.94	48.03
HORVU0Hr1G038940.1	Barley	cytosol	47.04	47.28
Bra007332.1-P	Field mustard	extracellular	49.75	46.76
Bra003286.1-P	Field mustard	extracellular	49.75	46.65
Bra016911.1-P	Field mustard	extracellular	49.51	46.42
Solyc01g087280.1.1	Tomato	extracellular	47.78	45.65
PGSC0003DMT400017691	Potato	extracellular	39.41	45.58
GSMUA_Achr1P22940_001	Banana	extracellular	49.51	45.58
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	49.51	44.87
Bra004655.1-P	Field mustard	extracellular	47.29	44.86
TraesCS4A01G066700.1	Wheat	extracellular	47.78	44.8
TraesCS4D01G243600.1	Wheat	extracellular	47.29	44.34
TraesCS4B01G244300.1	Wheat	extracellular	47.04	44.11
KXG39856	Sorghum	extracellular	46.31	43.72
Os03t0216800-01	Rice	extracellular	44.83	41.55
Zm00001d048079_P001	Maize	extracellular	45.81	40.26
Bra024602.1-P	Field mustard	cytosol	40.89	37.56
Bra003555.1-P	Field mustard	extracellular	40.89	37.14
Bra012375.1-P	Field mustard	cytosol	40.15	36.55
Bra016213.1-P	Field mustard	extracellular	41.63	36.19
Bra025631.1-P	Field mustard	extracellular	37.44	36.02
Bra016345.1-P	Field mustard	extracellular	41.38	35.9
Bra023600.1-P	Field mustard	extracellular	37.68	35.75
Bra008493.1-P	Field mustard	extracellular	33.74	35.13
Bra025099.1-P	Field mustard	extracellular	34.48	35.0
Bra008748.1-P	Field mustard	extracellular	37.44	34.62
Bra025103.1-P	Field mustard	extracellular	33.99	34.5
Bra008572.1-P	Field mustard	extracellular	36.45	34.1
Bra011341.1-P	Field mustard	cytosol	33.0	34.1
Bra001605.1-P	Field mustard	extracellular	37.68	33.85
Bra027926.1-P	Field mustard	extracellular	35.96	33.56
Bra027210.1-P	Field mustard	extracellular	37.68	33.55
Bra027211.1-P	Field mustard	extracellular	36.45	32.82
Bra018707.1-P	Field mustard	extracellular	37.19	31.99
Bra025216.1-P	Field mustard	extracellular	36.21	31.28
Bra000911.1-P	Field mustard	extracellular, vacuole	37.19	31.07
Bra033328.1-P	Field mustard	extracellular	36.7	30.35
Bra032600.1-P	Field mustard	extracellular	36.21	29.94
Bra031724.1-P	Field mustard	extracellular	36.7	28.93
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	36.45	27.87
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	36.21	27.58
Bra027148.1-P	Field mustard	extracellular	35.96	27.24
Bra040077.1-P	Field mustard	extracellular	24.14	26.85

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EnsemblPlantsGene:Bra029690	EnsemblPlants:Bra029690.1	EnsemblPlants:Bra029690.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4ELM2	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF28	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0002547DEE	:	:	:	:	:

Description

AT3G07970 (E=2e-208) QRT2 | QRT2 (QUARTET 2); polygalacturonase

Coordinates

chrA05:-:22637333..22639799

Molecular Weight (calculated)

44091.7 Da

IEP (calculated)

9.300

GRAVY (calculated)

-0.274

Length

406 amino acids

Sequence
(BLAST)

001: MSPDLYLETN HLHGHITRNN HMKNRHGYAP ASSPRAFNVK SFGAKANGND DSQAFKKAWN AACSSTGTVY VVVPKSRAYT LKSVKFSGPC KSSLIVFKIY
101: GKIEAWKDPS AYKERRLWIV FEAVNNLRVE GGGRIDGNGN KWWPNSCKIN PNLPCLGAPT AVTFVECKNL MVSNIRLENA QQMHMTFQDC ENVKALNLMV
201: TSPGNSPNTD GIHVTGTRNI LIQDSIIRTG DDCISIVSGS ENVRATGITC GPGHGISIGS LGANNSEAYV SNVVVNKATL IGTTNGVRIK TWQGGHGVAK
301: NIIFQDIIMK NVTNPIIINQ DYCDRVESCP QQKSAVQVSN VLYKNIQGTS SRPVAVKFEC SKSIPCQGIS MQNVKLVDQT QQDVVSTASC SNVKLDTKGH
401: VSPICT

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.