Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029690.1-P | Field mustard | cytosol | 79.5 | 85.96 |
| CDY35976 | Canola | extracellular | 79.27 | 82.66 |
| CDY28005 | Canola | extracellular | 79.04 | 82.42 |
| CDX74019 | Canola | extracellular | 79.73 | 80.09 |
| CDY07963 | Canola | extracellular | 79.73 | 79.91 |
| Bra001279.1-P | Field mustard | extracellular | 79.27 | 79.63 |
| VIT_13s0064g00760.t01 | Wine grape | cytosol | 43.51 | 57.53 |
| KRH23942 | Soybean | extracellular | 52.62 | 52.5 |
| KRH39858 | Soybean | extracellular | 52.16 | 51.93 |
| KRH32949 | Soybean | extracellular | 51.48 | 51.6 |
| KRH13966 | Soybean | extracellular | 51.48 | 51.48 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 45.1 | 49.87 |
| VIT_13s0064g00750.t01 | Wine grape | cytosol | 51.71 | 49.78 |
| PGSC0003DMT400017691 | Potato | extracellular | 37.59 | 47.01 |
| AT2G41850.1 | Thale cress | extracellular | 46.24 | 46.88 |
| GSMUA_Achr1P22940_001 | Banana | extracellular | 46.92 | 46.71 |
| HORVU0Hr1G038940.1 | Barley | cytosol | 42.82 | 46.53 |
| Solyc01g087280.1.1 | Tomato | extracellular | 44.87 | 46.35 |
| AT3G57510.1 | Thale cress | extracellular | 44.42 | 45.24 |
| TraesCS4A01G066700.1 | Wheat | extracellular | 44.42 | 45.03 |
| TraesCS4D01G243600.1 | Wheat | extracellular | 44.19 | 44.8 |
| TraesCS4B01G244300.1 | Wheat | extracellular | 43.96 | 44.57 |
| KXG39856 | Sorghum | extracellular | 42.37 | 43.26 |
| Os03t0216800-01 | Rice | extracellular | 41.91 | 42.01 |
| Zm00001d048079_P001 | Maize | extracellular | 41.23 | 39.18 |
| AT1G80170.1 | Thale cress | extracellular | 38.72 | 38.29 |
| AT5G44830.1 | Thale cress | extracellular | 28.93 | 38.25 |
| AT5G44840.1 | Thale cress | extracellular | 33.94 | 38.11 |
| AT4G35670.1 | Thale cress | extracellular | 33.94 | 37.82 |
| AT1G23460.1 | Thale cress | extracellular | 38.04 | 36.3 |
| AT5G14650.1 | Thale cress | extracellular | 35.76 | 36.09 |
| AT1G70500.1 | Thale cress | extracellular | 38.27 | 35.9 |
| AT5G17200.1 | Thale cress | extracellular | 34.4 | 35.87 |
| AT1G80140.1 | Thale cress | extracellular | 27.33 | 35.71 |
| AT5G39910.1 | Thale cress | extracellular | 30.07 | 35.39 |
| AT1G56710.1 | Thale cress | extracellular | 34.4 | 34.79 |
| AT3G15720.1 | Thale cress | extracellular | 35.76 | 34.43 |
| AT4G32370.1 | Thale cress | extracellular | 26.2 | 33.63 |
| AT3G26610.1 | Thale cress | extracellular | 34.17 | 31.91 |
| AT1G48100.1 | Thale cress | extracellular | 34.17 | 31.58 |
| AT4G01890.1 | Thale cress | extracellular | 32.8 | 30.84 |
| AT5G27530.1 | Thale cress | cytosol | 32.12 | 30.79 |
| AT1G02460.1 | Thale cress | extracellular | 33.26 | 29.74 |
| AT4G32380.1 | Thale cress | extracellular | 30.07 | 29.14 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 35.08 | 28.95 |
| AT1G60590.1 | Thale cress | extracellular | 32.35 | 26.3 |
| AT4G32375.1 | Thale cress | extracellular | 23.23 | 24.11 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:21.3.5.1.1 | EntrezGene:819988 | ProteinID:AAF21207.1 | ProteinID:AEE74626.1 | ArrayExpress:AT3G07970 |
| EnsemblPlantsGene:AT3G07970 | RefSeq:AT3G07970 | TAIR:AT3G07970 | RefSeq:AT3G07970-TAIR-G | EnsemblPlants:AT3G07970.1 | TAIR:AT3G07970.1 |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009830 | GO:GO:0009838 | GO:GO:0009901 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010047 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030154 |
| GO:GO:0030312 | GO:GO:0045490 | GO:GO:0048235 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| RefSeq:NP_187454.2 | PFAM:PF00295 | PO:PO:0000146 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 |
| PO:PO:0025022 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF28 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | UniProt:Q9SFB7 | Symbol:QRT2 | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0000163366 | : | : | : | : |
Description
QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
Coordinates
chr3:+:2540913..2543613
Molecular Weight (calculated)
48574.9 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.305
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.