Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85471 | Canola | extracellular | 69.6 | 72.17 |
| Bra023600.1-P | Field mustard | extracellular | 71.97 | 70.79 |
| CDY02729 | Canola | extracellular | 71.73 | 70.56 |
| Bra008572.1-P | Field mustard | extracellular | 68.88 | 66.82 |
| CDY16952 | Canola | extracellular | 68.65 | 66.59 |
| CDX69397 | Canola | extracellular | 62.47 | 65.1 |
| AT5G44830.1 | Thale cress | extracellular | 34.92 | 44.28 |
| AT4G35670.1 | Thale cress | extracellular | 40.14 | 42.89 |
| AT5G44840.1 | Thale cress | extracellular | 39.19 | 42.2 |
| PGSC0003DMT400008955 | Potato | extracellular | 34.68 | 41.95 |
| PGSC0003DMT400056828 | Potato | extracellular | 39.43 | 41.71 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 29.22 | 38.56 |
| AT3G15720.1 | Thale cress | extracellular | 41.33 | 38.16 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 38.24 | 38.15 |
| AT1G80140.1 | Thale cress | extracellular | 30.4 | 38.1 |
| AT5G39910.1 | Thale cress | extracellular | 33.49 | 37.8 |
| GSMUA_Achr11P... | Banana | extracellular | 37.29 | 37.74 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 29.69 | 37.54 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 36.34 | 37.05 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 35.15 | 36.54 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 33.73 | 36.32 |
| TraesCS2B01G423400.1 | Wheat | plastid | 30.17 | 36.18 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 34.68 | 36.05 |
| AT2G41850.1 | Thale cress | extracellular | 36.82 | 35.8 |
| AT4G32370.1 | Thale cress | extracellular | 28.98 | 35.67 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 33.97 | 35.66 |
| AT5G27530.1 | Thale cress | cytosol | 38.72 | 35.59 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 34.2 | 35.56 |
| AT3G57510.1 | Thale cress | extracellular | 36.34 | 35.5 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 35.15 | 35.49 |
| KXG26899 | Sorghum | extracellular | 34.92 | 35.0 |
| AT3G07970.1 | Thale cress | extracellular | 35.87 | 34.4 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 33.97 | 33.65 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 34.2 | 33.64 |
| AT1G56710.1 | Thale cress | extracellular | 34.2 | 33.18 |
| AT5G14650.1 | Thale cress | extracellular | 33.73 | 32.64 |
| Zm00001d039668_P001 | Maize | plastid | 33.49 | 32.27 |
| AT4G32380.1 | Thale cress | extracellular | 34.68 | 32.23 |
| AT1G80170.1 | Thale cress | extracellular | 33.02 | 31.31 |
| AT1G23460.1 | Thale cress | extracellular | 32.54 | 29.78 |
| Os01t0172900-00 | Rice | nucleus | 20.19 | 28.81 |
| AT1G70500.1 | Thale cress | extracellular | 31.83 | 28.63 |
| AT1G02460.1 | Thale cress | extracellular | 32.54 | 27.9 |
| AT1G48100.1 | Thale cress | extracellular | 31.12 | 27.58 |
| AT4G01890.1 | Thale cress | extracellular | 30.17 | 27.19 |
| AT4G32375.1 | Thale cress | extracellular | 27.08 | 26.95 |
| AT3G26610.1 | Thale cress | extracellular | 29.69 | 26.6 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 31.83 | 25.19 |
| AT1G60590.1 | Thale cress | extracellular | 30.17 | 23.52 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 37.29 | 20.82 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:831584 | ProteinID:AED92395.1 | ArrayExpress:AT5G17200 | EnsemblPlantsGene:AT5G17200 |
| RefSeq:AT5G17200 | TAIR:AT5G17200 | RefSeq:AT5G17200-TAIR-G | EnsemblPlants:AT5G17200.1 | TAIR:AT5G17200.1 | Unigene:At.54880 |
| ProteinID:BAB10507.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_197222.1 |
| PFAM:PF00295 | PO:PO:0000084 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0025022 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF42 | InterPro:PbH1 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9FFI9 | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI0000048B5F | : | : | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FFI9]
Coordinates
chr5:-:5653524..5655336
Molecular Weight (calculated)
45236.8 Da
IEP (calculated)
8.489
GRAVY (calculated)
-0.164
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL
101: SIRGNLVAPG YTWYAGRYTT WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG LSCSQNIEVR GLRMTAPGDS
201: PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED
301: INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL
401: FSSCKNAHGS LFASKVDCLK H
101: SIRGNLVAPG YTWYAGRYTT WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG LSCSQNIEVR GLRMTAPGDS
201: PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED
301: INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL
401: FSSCKNAHGS LFASKVDCLK H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.