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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 9
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 6
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400008955 Potato extracellular 87.44 100.0
Solyc08g060970.2.1 Tomato nucleus 95.48 95.72
KRH23567 Soybean extracellular 46.48 46.13
KRH23786 Soybean cytosol, extracellular, nucleus, plastid 41.71 46.11
KRH14715 Soybean cytosol, extracellular, nucleus, plastid 40.2 46.11
KRG88958 Soybean extracellular 40.45 45.35
AT5G44830.1 Thale cress extracellular 36.68 43.98
KRH48978 Soybean extracellular 32.91 43.96
AT4G35670.1 Thale cress extracellular 43.47 43.91
VIT_09s0002g06610.t01 Wine grape extracellular 42.46 43.44
KRH09740 Soybean extracellular 46.23 43.29
CDY50769 Canola extracellular 37.19 43.27
CDX72553 Canola extracellular 43.72 43.18
VIT_09s0002g06580.t01 Wine grape cytosol 42.21 42.97
CDY47032 Canola extracellular 43.47 42.93
KRH66273 Soybean extracellular 33.17 42.58
CDX85471 Canola extracellular 43.22 42.36
GSMUA_Achr9P22320_001 Banana extracellular 43.47 41.89
CDY39404 Canola extracellular 41.96 41.85
Bra025099.1-P Field mustard extracellular 41.96 41.75
CDY69377 Canola extracellular 41.71 41.5
KRH66276 Soybean extracellular 36.93 41.41
CDY39399 Canola extracellular 41.21 41.0
VIT_09s0002g06650.t01 Wine grape extracellular 41.46 40.84
VIT_09s0096g00850.t01 Wine grape cytoskeleton, cytosol, peroxisome 37.94 40.7
Bra025103.1-P Field mustard extracellular 40.7 40.5
AT5G44840.1 Thale cress extracellular 39.7 40.41
CDX73440 Canola extracellular 40.45 40.25
CDY02729 Canola extracellular 43.22 40.19
Bra023600.1-P Field mustard extracellular 43.22 40.19
KRH66305 Soybean extracellular 38.44 39.74
AT5G17200.1 Thale cress extracellular 41.71 39.43
Bra011341.1-P Field mustard cytosol 38.69 39.19
AT4G32370.1 Thale cress extracellular 33.67 39.18
Bra008572.1-P Field mustard extracellular 42.71 39.17
CDX69397 Canola extracellular 39.7 39.11
GSMUA_Achr11P... Banana extracellular 40.7 38.94
CDY16952 Canola extracellular 42.21 38.71
AT5G27530.1 Thale cress cytosol 44.47 38.65
GSMUA_Achr4P13200_001 Banana extracellular 40.7 38.39
CDY30105 Canola extracellular 42.96 38.08
AT3G15720.1 Thale cress extracellular 43.47 37.94
KRH05150 Soybean extracellular 25.63 37.92
Bra027211.1-P Field mustard extracellular 42.96 37.92
CDX97703 Canola extracellular 42.96 37.83
CDX75239 Canola cytosol 38.44 37.68
CDX68839 Canola cytosol 38.44 37.68
Bra027210.1-P Field mustard extracellular 42.96 37.5
TraesCS2A01G405600.1 Wheat extracellular 29.9 37.3
CDX97704 Canola extracellular 42.71 37.28
Bra001605.1-P Field mustard extracellular 42.21 37.17
CDY30107 Canola extracellular 42.46 37.06
TraesCS2B01G423400.1 Wheat plastid 32.66 37.04
TraesCS2B01G423300.1 Wheat extracellular 37.19 36.91
CDX75843 Canola extracellular 41.96 36.87
TraesCS2D01G402100.1 Wheat extracellular 37.44 36.79
CDY58462 Canola extracellular 41.71 36.64
TraesCS2A01G405300.1 Wheat extracellular, nucleus 37.19 36.54
HORVU2Hr1G096130.1 Barley extracellular 37.19 36.54
PGSC0003DMT400001638 Potato extracellular, plastid 40.95 36.3
PGSC0003DMT400017691 Potato extracellular 31.91 36.18
KXG26899 Sorghum extracellular 37.94 35.95
TraesCS2A01G405100.1 Wheat extracellular 37.19 35.49
TraesCS2D01G402200.1 Wheat extracellular 34.67 35.29
CDY39884 Canola extracellular 39.2 35.06
TraesCS2D01G402300.1 Wheat extracellular 29.15 34.83
PGSC0003DMT400007095 Potato cytosol 37.44 34.25
TraesCS2D01G402000.1 Wheat extracellular 36.68 34.11
TraesCS2B01G423200.1 Wheat extracellular 35.68 33.41
Zm00001d039668_P001 Maize plastid 36.43 33.18
PGSC0003DMT400013344 Potato extracellular 38.94 32.84
PGSC0003DMT400055713 Potato extracellular 37.19 32.31
AT4G32380.1 Thale cress extracellular 35.93 31.57
PGSC0003DMT400080722 Potato extracellular 36.43 31.52
Bra040077.1-P Field mustard extracellular 28.89 31.51
PGSC0003DMT400070039 Potato cytosol 32.41 31.46
PGSC0003DMT400035101 Potato extracellular, golgi 37.94 31.39
PGSC0003DMT400077010 Potato cytosol 36.18 31.1
PGSC0003DMT400075723 Potato extracellular 37.69 30.86
PGSC0003DMT400035162 Potato extracellular 38.44 29.94
AT4G32375.1 Thale cress extracellular 31.41 29.55
Os01t0172900-00 Rice nucleus 21.61 29.15
GSMUA_Achr4P06370_001 Banana extracellular 39.45 20.82
Protein Annotations
EntrezGene:102602941Gene3D:2.160.20.10MapMan:50.3.2GO:GO:0003674GO:GO:0003824GO:GO:0004650
GO:GO:0005575GO:GO:0005576GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016043GO:GO:0016787GO:GO:0016798GO:GO:0071555InterPro:Glyco_hydro_28InterPro:IPR012334
UniProt:M1BZY3PFAM:PF00295EnsemblPlantsGene:PGSC0003DMG400022104PGSC:PGSC0003DMG400022104EnsemblPlants:PGSC0003DMT400056828ScanProsite:PS00502
PANTHER:PTHR31375PANTHER:PTHR31375:SF42InterPro:PbH1InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710
SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0002958ED4RefSeq:XP_015161058.1::
Description
Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400022104]
Coordinates
chr8:-:31624736..31629389
Molecular Weight (calculated)
43176.0 Da
IEP (calculated)
7.883
GRAVY (calculated)
-0.174
Length
398 amino acids
Sequence
(BLAST)
001: MKGQAFIFLI CITSFLIERS LAGIFDVTRY GASGDGVHDD TQAFKQVWRA ACSDENPSIL IPSERSFLVG PITFQGPCKS TNIHIQLSGS IVAPKDPEAW
101: TGCENVCWIY FTGVAGLFIN GSGTINGNGQ RWWDTPSRTR VNGTCTKPTV VQFNYCNGLR LNGIKLVNSS RDHIILTYNK GVTISNIHIS APNYSRNTDG
201: IDIFFSSQVQ IRDSIIQTGD DCIGINTGFS DINITGIRCG PGHGISIGSL GPNNTFANVE NVYITNCHLE DTQNGVRIKS WQGGSGYARS IHFENINLKN
301: VENPIIIDQN YCNGGHSCQP QVSAVKVSNV TYKKIYGTTS SKLAINMNCS NSTACTNVEL ENIYITSVEP GKKIFATCNN VKGKASSNSP HVSCLSQG
Best Arabidopsis Sequence Match ( AT5G27530.1 )
(BLAST)
001: MEDMVTIQKN GDIPAFVRVT TQWHGLMSFP ETILRISILI NFICFGLVNG QIYNVLKFGA EGDGQTDDSN AFLQAWNATC GGEENINTLF IPSGKTYLLQ
101: PIEFKGPCKS TSIKLQLDGI IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT SIDSPKSHIS IKNCHYVAIS
201: KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ
301: GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS
401: DNDLMRECFN SNSTFSGGSV GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4C2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.