Factsheet for VIT_09s0002g06580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06610.t01	Wine grape	extracellular	59.34	59.64
VIT_09s0002g06650.t01	Wine grape	extracellular	50.38	48.76
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	40.41	42.59
PGSC0003DMT400056828	Potato	extracellular	42.97	42.21
PGSC0003DMT400008955	Potato	extracellular	37.08	41.67
VIT_17s0000g05670.t01	Wine grape	extracellular	40.66	40.46
VIT_13s0064g00760.t01	Wine grape	cytosol	33.5	39.46
GSMUA_Achr9P22320_001	Banana	extracellular	40.41	38.26
AT3G15720.1	Thale cress	extracellular	43.99	37.72
Bra027210.1-P	Field mustard	extracellular	43.99	37.72
CDX97704	Canola	extracellular	43.99	37.72
TraesCS2B01G423400.1	Wheat	plastid	33.76	37.61
GSMUA_Achr11P...	Banana	extracellular	39.9	37.5
VIT_17s0000g05660.t01	Wine grape	extracellular	37.08	37.47
GSMUA_Achr4P13200_001	Banana	extracellular	40.15	37.2
CDX75843	Canola	extracellular	42.97	37.09
CDY30107	Canola	extracellular	43.22	37.06
TraesCS2D01G402200.1	Wheat	extracellular	36.83	36.83
Bra027211.1-P	Field mustard	extracellular	42.46	36.81
CDY30105	Canola	extracellular	42.2	36.75
Bra001605.1-P	Field mustard	extracellular	42.46	36.73
CDX97703	Canola	extracellular	42.46	36.73
CDY58462	Canola	extracellular	42.46	36.64
VIT_09s0002g06380.t01	Wine grape	cytosol	38.62	36.47
TraesCS2A01G405600.1	Wheat	extracellular	29.41	36.05
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	37.34	36.05
TraesCS2B01G423300.1	Wheat	extracellular	36.57	35.66
TraesCS2D01G402100.1	Wheat	extracellular	36.57	35.31
TraesCS2A01G405100.1	Wheat	extracellular	37.34	35.01
TraesCS2D01G402300.1	Wheat	extracellular	29.41	34.53
VIT_08s0007g08330.t01	Wine grape	extracellular	38.87	34.23
TraesCS2B01G423200.1	Wheat	extracellular	37.08	34.12
TraesCS2D01G402000.1	Wheat	extracellular	37.34	34.11
KXG26899	Sorghum	extracellular	36.57	34.05
HORVU2Hr1G096130.1	Barley	extracellular	35.04	33.83
VIT_08s0007g07780.t01	Wine grape	extracellular	36.83	33.18
VIT_08s0007g07750.t01	Wine grape	extracellular	37.34	33.03
VIT_08s0007g07760.t01	Wine grape	extracellular	36.32	32.64
VIT_08s0007g07770.t01	Wine grape	extracellular	36.57	32.35
Zm00001d039668_P001	Maize	plastid	35.81	32.04
VIT_14s0060g00620.t01	Wine grape	extracellular	37.85	31.9
VIT_13s0064g00750.t01	Wine grape	cytosol	37.08	31.8
VIT_07s0005g02090.t01	Wine grape	extracellular	36.57	30.75
VIT_14s0066g01060.t01	Wine grape	extracellular	37.85	30.64
Os01t0172900-00	Rice	nucleus	22.76	30.17
VIT_05s0020g00420.t01	Wine grape	extracellular	35.55	29.14
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	36.32	27.41
VIT_01s0127g00120.t01	Wine grape	extracellular	32.74	26.72
GSMUA_Achr4P06370_001	Banana	extracellular	42.2	21.88

Protein Annotations

EntrezGene:100262829	wikigene:100262829	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CBI36303	ProteinID:CBI36303.3
UniProt:D7U107	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100262829
wikigene:LOC100262829	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000198403D	ArrayExpress:VIT_09s0002g06580
EnsemblPlantsGene:VIT_09s0002g06580	EnsemblPlants:VIT_09s0002g06580.t01	RefSeq:XP_002266960	RefSeq:XP_002266960.1	:	:

Description

No Description!

Coordinates

chr9:-:6501025..6504291

Molecular Weight (calculated)

42321.5 Da

IEP (calculated)

7.585

GRAVY (calculated)

-0.046

Length

391 amino acids

Sequence
(BLAST)

001: MASIGLGKIG LSDDDELSTI NVRDFGAIGD GTTDDSQAFL KAWKKACGIQ AGYVNFIIES GKAFLLKPIR FEGPCRASYI NIQVLGTITA PKSIYEWGGQ
101: SVDNWLIFFR INGLIVNGKG TINGQGSIWW QQLPKNNLFH PLDALSFVGC NNLKLDHLNL INSPRRHVVI FNINGATISN LNIIAPKESP NTDGIDIGQS
201: TNIQLHYCNI KTGDDCIAIG PSSFYINISN IACGPGHGIS IGSLGLNGRT DKVEEVQVRD CTFTGTRNGV RIKTWEGGSG YARKILFEGI TLNAADNPII
301: IDQYYCPNNM CSKQSTSGVK LSDISFTRVI GTTTTKNAIN LSCSKSVACT NILLNHVNIK SAYSEDVVSS YCINAHGRFS DSVPPVDCLL N

Best Arabidopsis Sequence Match ( AT3G15720.3 )
(BLAST)

001: MKKTWFLNFS LFFLQIFTSS NALDVTQFGA VGDGVTDDSQ AFLKAWEAVC SGTGDGQFVV PAGMTFMLQP LKFQGSCKST PVFVQMLGKL VAPSKGNWKG
101: DKDQWILFTD IEGLVIEGDG EINGQGSSWW EHKGSRPTAL KFRSCNNLRL SGLTHLDSPM AHIHISECNY VTISSLRINA PESSPNTDGI DVGASSNVVI
201: QDCIIATGDD CIAINSGTSN IHISGIDCGP GHGISIGSLG KDGETATVEN VCVQNCNFRG TMNGARIKTW QGGSGYARMI TFNGITLDNV ENPIIIDQFY
301: NGGDSDNAKD RKSSAVEVSK VVFSNFIGTS KSEYGVDFRC SERVPCTEIF LRDMKIETAS SGSGQVAQGQ CLNVRGASTI AVPGLECLEL STDMFSSAQL
401: LEQTCMSAQS VQPRTTTQPM QDPIWVFQSR GKQLRVYNIA ILVSFISLVT YILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.