Factsheet for VIT_14s0066g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93260	Soybean	extracellular	66.25	72.23
KRH56581	Soybean	extracellular	64.39	70.84
HORVU3Hr1G031180.1	Barley	extracellular	19.25	65.96
Os05t0578600-01	Rice	cytosol, extracellular	42.24	65.38
CDX69569	Canola	extracellular	59.01	64.92
Bra008748.1-P	Field mustard	extracellular	58.8	64.69
AT5G14650.1	Thale cress	extracellular	58.18	64.6
Os01t0637500-00	Rice	cytosol, extracellular	45.13	64.5
CDY09873	Canola	extracellular	58.59	64.46
Solyc07g015870.2.1	Tomato	extracellular	55.9	60.13
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	62.32	58.11
GSMUA_Achr4P02960_001	Banana	extracellular	56.94	57.89
PGSC0003DMT400077010	Potato	cytosol	55.28	57.67
GSMUA_Achr6P22080_001	Banana	extracellular	57.56	57.32
GSMUA_Achr5P09080_001	Banana	extracellular	57.56	57.08
GSMUA_Achr1P27280_001	Banana	extracellular	57.76	54.71
TraesCS1A01G418000.1	Wheat	extracellular	56.11	53.14
HORVU3Hr1G056270.10	Barley	extracellular	57.56	52.26
EES01142	Sorghum	extracellular	57.14	51.88
Os01t0636500-01	Rice	extracellular	57.76	51.86
TraesCS3B01G258600.2	Wheat	extracellular	57.56	51.77
TraesCS3A01G225800.2	Wheat	extracellular	57.76	51.76
TraesCS1B01G448100.1	Wheat	extracellular	56.52	51.51
EES20001	Sorghum	extracellular	57.14	51.4
TraesCS3D01G223900.1	Wheat	extracellular	56.94	51.31
TraesCS1D01G425600.1	Wheat	extracellular	55.9	51.23
Zm00001d044110_P001	Maize	extracellular	56.52	50.37
Zm00001d011444_P002	Maize	extracellular	56.11	50.09
HORVU1Hr1G091430.5	Barley	extracellular	57.14	49.82
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	52.8	49.42
VIT_01s0127g00120.t01	Wine grape	extracellular	44.93	45.3
VIT_07s0005g02090.t01	Wine grape	extracellular	40.37	41.94
VIT_05s0020g00420.t01	Wine grape	extracellular	40.58	41.09
VIT_13s0064g00760.t01	Wine grape	cytosol	28.16	40.96
VIT_14s0060g00620.t01	Wine grape	extracellular	38.92	40.52
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	29.81	38.81
VIT_08s0007g07760.t01	Wine grape	extracellular	34.58	38.39
VIT_09s0002g06610.t01	Wine grape	extracellular	30.85	38.3
VIT_17s0000g05670.t01	Wine grape	extracellular	30.85	37.91
VIT_09s0002g06580.t01	Wine grape	cytosol	30.64	37.85
VIT_09s0002g06380.t01	Wine grape	cytosol	32.3	37.68
VIT_08s0007g07780.t01	Wine grape	extracellular	33.75	37.56
VIT_08s0007g07750.t01	Wine grape	extracellular	34.37	37.56
VIT_08s0007g07770.t01	Wine grape	extracellular	34.16	37.33
VIT_08s0007g08330.t01	Wine grape	extracellular	34.16	37.16
VIT_17s0000g05660.t01	Wine grape	extracellular	27.95	34.88
VIT_09s0002g06650.t01	Wine grape	extracellular	28.57	34.16
VIT_13s0064g00750.t01	Wine grape	cytosol	31.68	33.55

Protein Annotations

EntrezGene:100233039	wikigene:100233039	MapMan:50.3.2	ProteinID:AAD45350	ProteinID:AAD45350.1	ProteinID:ABW76153
ProteinID:ABW76153.1	EMBL:AF159125	ProteinID:CBI34901	ProteinID:CBI34901.3	UniProt:D7TWM6	EMBL:EU078975
EMBL:FN596252	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	EntrezGene:LOC100233039	wikigene:LOC100233039	PFAM:PF00295
PFscan:PS51257	PANTHER:PTHR31375	PANTHER:PTHR31375:SF34	InterPro:PbH1	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC70021	UniParc:UPI0001BE4563	ArrayExpress:VIT_14s0066g01060	EnsemblPlantsGene:VIT_14s0066g01060
EnsemblPlants:VIT_14s0066g01060.t01	unigene:Vvi.20133	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:27507736..27510290

Molecular Weight (calculated)

51676.0 Da

IEP (calculated)

7.842

GRAVY (calculated)

-0.249

Length

483 amino acids

Sequence
(BLAST)

001: MSGFSLKRLA LTILIALLAC SSSFQACSAR KAMYTRQLKT IGKGYDGYNY QDPKLMDEGN GVTPLKNTGS STFNVLHFGA KGDGKADDTK AFEAAWAAAC
101: QVRGSTMMVP SGSVFLVKPI TFSGPNCEPN IVFQLDGKII APRSSSAWGS GFYQWLDFSK LQGITIRGKG TIDGQGSIWW NDSTDESESE TPTAGDSLYS
201: SKQDSISGEL SAKMPSTKPT ALRFYGSSVV TVTGITIQNS PQTHLKFDDC TGVQVSGVTV SSPGDSPNTD GIHLQNSQNV VIYSTNLACG DDCVSIQTGC
301: SNIFVHNVNC GPGHGISIGG LGRDNTKACV KNVTVRDITM QDTMTGVRIK TWQGGSGSVS GVMFSNIQVS RVKTPIMIDQ FYCDKSRCQN ETKAVAVSDI
401: NYVNIRGTYT VNPVHFACSD SLPCSGVTLT TIQLKPAQEV SQSNGPFCWE TYGQLKTNTI PPIDCLQRGK PSKNQLHSNG DSC

Best Arabidopsis Sequence Match ( AT5G14650.1 )
(BLAST)

001: MCRLTLKCLS LNFLLLISLF SSRFGTCDAR YSVYWKGNRR SIAEGGSSGT INVLDHGAKG DGTSDDTKAF EDAWQVACKV AASTLLVPSG STFLVGPVSF
101: LGKECKEKIV FQLEGKIIAP TSASAWGSGL LQWIEFKALQ GITIKGKGII DGRGSVWWND MMGTKMPRTK PTALRFYGSN GVTVSGITIQ NSPQTHLKFD
201: NCISIQVSDF TTSSPGDSPN TDGIHLQNSQ DAVIYRSTLA CGDDCISIQT GCSNINIHDV DCGPGHGISI GGLGKDNTKA CVSNITVRDV TMHETTNGVR
301: IKSWQGGSGS VKQVMFSNIQ VSNVANPIII DQYYCDGGGC HNETSAVAVS NINYINIKGT YTKEPVRFAC SDSLPCTGIS LSTIELKPAT GKASSLDPFC
401: WKAHGELKTK TLPPIQCLKT EKSPEAASRS NNDAC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.