Factsheet for VIT_09s0002g06650.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06610.t01	Wine grape	extracellular	48.76	50.64
VIT_09s0002g06580.t01	Wine grape	cytosol	48.76	50.38
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	43.81	47.71
VIT_17s0000g05670.t01	Wine grape	extracellular	40.35	41.48
PGSC0003DMT400056828	Potato	extracellular	40.84	41.46
TraesCS2B01G423400.1	Wheat	plastid	35.89	41.31
GSMUA_Achr4P13200_001	Banana	extracellular	43.07	41.23
GSMUA_Achr11P...	Banana	extracellular	41.83	40.62
VIT_17s0000g05660.t01	Wine grape	extracellular	38.37	40.05
PGSC0003DMT400008955	Potato	extracellular	34.41	39.94
Bra027211.1-P	Field mustard	extracellular	44.55	39.91
TraesCS2D01G402200.1	Wheat	extracellular	38.61	39.9
TraesCS2D01G402100.1	Wheat	extracellular	39.85	39.75
GSMUA_Achr9P22320_001	Banana	extracellular	40.59	39.71
CDY30105	Canola	extracellular	44.06	39.64
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	39.6	39.51
TraesCS2A01G405600.1	Wheat	extracellular	31.19	39.5
Bra027210.1-P	Field mustard	extracellular	44.55	39.47
AT3G15720.1	Thale cress	extracellular	44.55	39.47
VIT_13s0064g00760.t01	Wine grape	cytosol	32.43	39.46
CDX97703	Canola	extracellular	44.06	39.38
CDX97704	Canola	extracellular	44.31	39.25
TraesCS2B01G423300.1	Wheat	extracellular	38.86	39.15
CDY58462	Canola	extracellular	43.81	39.07
CDX75843	Canola	extracellular	43.81	39.07
CDY30107	Canola	extracellular	44.06	39.04
Bra001605.1-P	Field mustard	extracellular	43.32	38.72
HORVU2Hr1G096130.1	Barley	extracellular	38.37	38.27
TraesCS2D01G402300.1	Wheat	extracellular	31.44	38.14
VIT_09s0002g06380.t01	Wine grape	cytosol	38.61	37.68
VIT_08s0007g08330.t01	Wine grape	extracellular	41.09	37.39
VIT_08s0007g07780.t01	Wine grape	extracellular	39.6	36.87
VIT_08s0007g07760.t01	Wine grape	extracellular	39.6	36.78
TraesCS2A01G405100.1	Wheat	extracellular	37.87	36.69
VIT_08s0007g07750.t01	Wine grape	extracellular	39.85	36.43
VIT_08s0007g07770.t01	Wine grape	extracellular	39.6	36.2
KXG26899	Sorghum	extracellular	37.62	36.19
TraesCS2B01G423200.1	Wheat	extracellular	37.13	35.29
TraesCS2D01G402000.1	Wheat	extracellular	37.38	35.28
VIT_13s0064g00750.t01	Wine grape	cytosol	38.12	33.77
VIT_14s0060g00620.t01	Wine grape	extracellular	37.62	32.76
Zm00001d039668_P001	Maize	plastid	35.15	32.49
VIT_07s0005g02090.t01	Wine grape	extracellular	36.14	31.4
VIT_05s0020g00420.t01	Wine grape	extracellular	36.88	31.24
Os01t0172900-00	Rice	nucleus	22.52	30.85
VIT_14s0066g01060.t01	Wine grape	extracellular	34.16	28.57
VIT_01s0127g00120.t01	Wine grape	extracellular	32.43	27.35
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	34.16	26.64
GSMUA_Achr4P06370_001	Banana	extracellular	41.58	22.28

Protein Annotations

EntrezGene:100259292	wikigene:100259292	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CBI36307	ProteinID:CBI36307.3
UniProt:D7U111	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004650
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015074	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100259292
wikigene:LOC100259292	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0001BE4A7E
ArrayExpress:VIT_09s0002g06650	EnsemblPlantsGene:VIT_09s0002g06650	EnsemblPlants:VIT_09s0002g06650.t01	RefSeq:XP_002266543	RefSeq:XP_002266543.2	:

Description

No Description!

Coordinates

chr9:-:6564403..6567208

Molecular Weight (calculated)

43167.0 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.063

Length

404 amino acids

Sequence
(BLAST)

001: MQELFTIFLV LCMAAMGTCR SVDFSLLQGG QTNVMNYGAV GNGATDDSQA FMRAWRDICA GKSYPNLVIP GGKTFLLRPV QFYGPCKPSK IYVEVYGRIV
101: APKLYDYGSN NLNCWIGFWH VNGLTVKGNG QINGRGAEWW QAYTSTYCKL NASTPSIAMG FYSCNNLLLQ GLNFINSQRN HISVSGSNGV TISHLTITAP
201: DSSPNTDGID ISHSKNVRVS DSTIGTGDDC IAFGDQTSQV FVKGVACGPG HGISIGSLGV GGASAQVEEI HVDSCSFKGT QNGARIKTWQ GGSGYARKIT
301: FNNIKLEDAE NPIIIDQYYC PHSVCQTTTS AVQISDVSFT GFLGTSATDN AIKLSCSETV GCTNISLDYI NIKLASGNGN TYSSCINAHG TAHNTFPSLL
401: CLKN

Best Arabidopsis Sequence Match ( AT3G15720.3 )
(BLAST)

001: MKKTWFLNFS LFFLQIFTSS NALDVTQFGA VGDGVTDDSQ AFLKAWEAVC SGTGDGQFVV PAGMTFMLQP LKFQGSCKST PVFVQMLGKL VAPSKGNWKG
101: DKDQWILFTD IEGLVIEGDG EINGQGSSWW EHKGSRPTAL KFRSCNNLRL SGLTHLDSPM AHIHISECNY VTISSLRINA PESSPNTDGI DVGASSNVVI
201: QDCIIATGDD CIAINSGTSN IHISGIDCGP GHGISIGSLG KDGETATVEN VCVQNCNFRG TMNGARIKTW QGGSGYARMI TFNGITLDNV ENPIIIDQFY
301: NGGDSDNAKD RKSSAVEVSK VVFSNFIGTS KSEYGVDFRC SERVPCTEIF LRDMKIETAS SGSGQVAQGQ CLNVRGASTI AVPGLECLEL STDMFSSAQL
401: LEQTCMSAQS VQPRTTTQPM QDPIWVFQSR GKQLRVYNIA ILVSFISLVT YILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.