Factsheet for VIT_09s0002g06380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09752	Soybean	extracellular	59.66	53.93
Solyc06g068040.2.1	Tomato	nucleus	56.52	53.55
PGSC0003DMT400001638	Potato	extracellular, plastid	55.8	51.45
Solyc03g116500.2.1	Tomato	nucleus	55.56	50.88
AT1G80170.1	Thale cress	extracellular	53.38	49.77
CDY54312	Canola	extracellular	53.14	49.55
CDY57689	Canola	extracellular	53.38	49.44
Bra003555.1-P	Field mustard	extracellular	52.66	48.77
GSMUA_Achr3P13670_001	Banana	extracellular	52.17	47.47
VIT_13s0064g00760.t01	Wine grape	cytosol	36.72	45.78
EES18597	Sorghum	extracellular	42.03	42.65
TraesCS1D01G370300.3	Wheat	extracellular	42.27	42.58
Zm00001d038874_P002	Maize	extracellular	42.03	42.23
TraesCS1B01G382200.2	Wheat	extracellular	42.03	42.03
TraesCS1A01G364800.2	Wheat	extracellular	41.79	41.79
Os05t0542800-02	Rice	extracellular	42.75	41.55
VIT_08s0007g08330.t01	Wine grape	extracellular	42.27	39.41
VIT_09s0002g06580.t01	Wine grape	cytosol	36.47	38.62
VIT_09s0002g06650.t01	Wine grape	extracellular	37.68	38.61
VIT_08s0007g07750.t01	Wine grape	extracellular	41.06	38.46
TraesCS1D01G370700.1	Wheat	extracellular	38.89	38.42
Os05t0542900-01	Rice	extracellular	41.06	38.2
VIT_08s0007g07760.t01	Wine grape	extracellular	40.1	38.16
VIT_13s0064g00750.t01	Wine grape	cytosol	42.03	38.16
VIT_08s0007g07770.t01	Wine grape	extracellular	40.34	37.78
TraesCS1B01G382700.1	Wheat	extracellular	38.16	37.71
TraesCS3A01G024500.1	Wheat	extracellular	39.86	37.33
TraesCS1D01G370800.1	Wheat	extracellular	39.13	37.33
VIT_14s0060g00620.t01	Wine grape	extracellular	41.55	37.07
TraesCS3B01G020300.1	Wheat	extracellular	39.61	37.02
TraesCS3D01G021700.1	Wheat	extracellular	39.37	36.96
HORVU1Hr1G079130.2	Barley	extracellular	38.65	36.87
TraesCS1A01G365300.1	Wheat	extracellular	38.65	36.78
VIT_08s0007g07780.t01	Wine grape	extracellular	38.41	36.64
HORVU3Hr1G006180.2	Barley	extracellular	37.92	36.51
VIT_09s0002g06610.t01	Wine grape	extracellular	34.3	36.5
TraesCS1B01G382800.1	Wheat	extracellular	37.92	36.18
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	32.37	36.12
VIT_17s0000g05670.t01	Wine grape	extracellular	34.06	35.88
VIT_07s0005g02090.t01	Wine grape	extracellular	39.86	35.48
TraesCS1A01G365200.1	Wheat	extracellular	39.13	35.29
Zm00001d038875_P001	Maize	extracellular	38.41	33.76
VIT_17s0000g05660.t01	Wine grape	extracellular	31.4	33.59
HORVU1Hr1G079140.6	Barley	plastid	39.13	33.13
KXG22449	Sorghum	extracellular, golgi	37.44	33.12
VIT_05s0020g00420.t01	Wine grape	extracellular	37.44	32.49
VIT_14s0066g01060.t01	Wine grape	extracellular	37.68	32.3
VIT_01s0127g00120.t01	Wine grape	extracellular	35.27	30.48
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	37.44	29.92

Protein Annotations

EntrezGene:100263423	wikigene:100263423	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CCB59579	ProteinID:CCB59579.1
UniProt:F6HXA9	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100263423	wikigene:LOC100263423	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF91
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	TIGR:TC60288	UniParc:UPI0002109FC5	ArrayExpress:VIT_09s0002g06380
EnsemblPlantsGene:VIT_09s0002g06380	EnsemblPlants:VIT_09s0002g06380.t01	unigene:Vvi.12217	RefSeq:XP_002281827	RefSeq:XP_002281827.2	:

Description

No Description!

Coordinates

chr9:+:6285866..6293450

Molecular Weight (calculated)

45062.0 Da

IEP (calculated)

9.202

GRAVY (calculated)

-0.091

Length

414 amino acids

Sequence
(BLAST)

001: MLTQEVMKLP HSPAARPRLE TKILYVNQFG AKGDGVQDDT DAFRNAWKIA CASITKASIV IPHDKKFLVR PISFGGPCRA KVTVTISGTI IAPKDPDVWH
101: GLNPQKWLYF HGVNHLTVRG SGIINGRGHK WWSQSCKINA TNPCEHAPTA IIFHRCKKLR VRDIALINSQ RTHIAFTNSF RIVVSGIKMI APASSPNTDG
201: LHISSSSRVN IKDSIIRTGD DCISIVGNSS IIRIKNIACG PGHGISVGSL GMGNSWAQVH DVIVDQAFLA HTKNGLRIKT WQGGRGFASQ ITFQNVLMEN
301: VSHPIIIDQY YCDSLTPCLN QTLAVKVANI SYVSIKGTSA TEESVRFACS DSFPCEKLYL EEVQLLSYTG KNTSSFCWEA QGLTSGSVDP PACFSSNGTF
401: IGQKADSGSA LQSF

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.