Factsheet for HORVU1Hr1G079140.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, mitochondrion, peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G382700.1	Wheat	extracellular	80.57	94.03
TraesCS1D01G370700.1	Wheat	extracellular	80.16	93.56
TraesCS1A01G365200.1	Wheat	extracellular	79.55	84.75
HORVU1Hr1G079130.2	Barley	extracellular	51.53	58.06
HORVU3Hr1G006180.2	Barley	extracellular	49.08	55.81
VIT_09s0002g06380.t01	Wine grape	cytosol	33.13	39.13
GSMUA_Achr3P13670_001	Banana	extracellular	36.2	38.9
PGSC0003DMT400001638	Potato	extracellular, plastid	35.17	38.31
CDY54312	Canola	extracellular	34.36	37.84
Solyc03g116500.2.1	Tomato	nucleus	34.97	37.83
Solyc06g068040.2.1	Tomato	nucleus	33.74	37.76
CDY57689	Canola	extracellular	34.15	37.36
Bra003555.1-P	Field mustard	extracellular	33.95	37.14
AT1G80170.1	Thale cress	extracellular	33.54	36.94
KRH09752	Soybean	extracellular	34.15	36.46
HORVU5Hr1G109970.1	Barley	extracellular	30.67	36.14
HORVU0Hr1G038940.1	Barley	cytosol	29.45	35.64
HORVU7Hr1G034150.1	Barley	extracellular	29.65	35.02
HORVU2Hr1G096130.1	Barley	extracellular	28.22	34.07
HORVU5Hr1G109980.2	Barley	extracellular, plastid	31.08	33.85
HORVU1Hr1G013520.1	Barley	cytosol	27.2	33.84
HORVU3Hr1G024420.1	Barley	cytosol	15.34	33.63
HORVU1Hr1G067840.1	Barley	extracellular, plastid	29.65	30.46
HORVU6Hr1G015390.2	Barley	extracellular, golgi	32.72	30.3
HORVU3Hr1G031180.1	Barley	extracellular	8.59	29.79
HORVU7Hr1G078960.2	Barley	extracellular	28.63	28.63
HORVU3Hr1G056270.10	Barley	extracellular	27.2	25.0
HORVU1Hr1G091430.5	Barley	extracellular	27.61	24.37

Protein Annotations

EnsemblPlants:HORVU1Hr1G079140.6	EnsemblPlantsGene:HORVU1Hr1G079140	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	PFAM:PF00295
SEG:seg	SUPFAM:SSF51126	UniParc:UPI000B48206F	UniProt:A0A287GE94	MapMan:50.3.2	:

Description

No Description!

Coordinates

chrchr1H:-:522447715..522449964

Molecular Weight (calculated)

52069.0 Da

IEP (calculated)

8.005

GRAVY (calculated)

-0.162

Length

489 amino acids

Sequence
(BLAST)

001: MLRVTPSPAR HLKSEQRAPA PPSLAWPPPP VLSPRCASSN APPARDSQRQ QPLAWRGPPR AANPPITRCM ATATALLRLA ALAGAVALLL PGAAEARVLL
101: SLDDFGAVGD GIADDTQVLV DAWKVACADS NDHVVIHVPA GKSYQIWPVT LAGPCRDEIM LFVSGNIIAP ESPEDWDRSD GGKWLHFFQV QDLTVSGGGV
201: IDGRGQEWWA QACKGKKHRN DKHCTAQDAP KALHFEECHG VRVQGVTLQN GQQHHLTFTR CSNARASFLR VASPESSPDT DGIRLVNSIS VHINDIHIAT
301: GGACVSMAGN CTDVRLRYIS CGPGNGISIG SIGETPVADR LEKIEVDTMF IANTTNGLLI KTWQDGCGYA RKVKFANVVM KNVSNPIIID QYRSEHPIPC
401: GSTAATRTVA VEKIDYVNIA GTSASKRAVT FSCSDVVPCR QVSLKDVNLK RLSGRGASAY CRSASGKAAG VVVPESCLAG ARAAGDEDE

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.