Factsheet for HORVU3Hr1G006180.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G024500.1	Wheat	extracellular	84.65	82.35
TraesCS3D01G021700.1	Wheat	extracellular	83.95	81.86
TraesCS3B01G020300.1	Wheat	extracellular	83.95	81.49
HORVU1Hr1G079130.2	Barley	extracellular	81.16	80.41
Os05t0542900-01	Rice	extracellular	59.77	57.75
Zm00001d038875_P001	Maize	extracellular	55.12	50.32
KXG22449	Sorghum	extracellular, golgi	53.95	49.57
HORVU1Hr1G079140.6	Barley	plastid	55.81	49.08
VIT_09s0002g06380.t01	Wine grape	cytosol	36.51	37.92
PGSC0003DMT400001638	Potato	extracellular, plastid	39.07	37.42
Solyc03g116500.2.1	Tomato	nucleus	39.3	37.39
KRH09752	Soybean	extracellular	38.14	35.81
Solyc06g068040.2.1	Tomato	nucleus	35.81	35.24
CDY54312	Canola	extracellular	36.28	35.14
Bra003555.1-P	Field mustard	extracellular	36.28	34.9
CDY57689	Canola	extracellular	36.28	34.9
GSMUA_Achr3P13670_001	Banana	extracellular	36.74	34.73
AT1G80170.1	Thale cress	extracellular	35.35	34.23
HORVU0Hr1G038940.1	Barley	cytosol	30.23	32.18
HORVU7Hr1G034150.1	Barley	extracellular	30.47	31.64
HORVU5Hr1G109970.1	Barley	extracellular	30.47	31.57
HORVU1Hr1G013520.1	Barley	cytosol	28.37	31.04
HORVU3Hr1G031180.1	Barley	extracellular	10.0	30.5
HORVU1Hr1G067840.1	Barley	extracellular, plastid	33.49	30.25
HORVU2Hr1G096130.1	Barley	extracellular	28.37	30.12
HORVU5Hr1G109980.2	Barley	extracellular, plastid	31.16	29.84
HORVU3Hr1G024420.1	Barley	cytosol	14.65	28.25
HORVU6Hr1G015390.2	Barley	extracellular, golgi	34.65	28.22
HORVU3Hr1G056270.10	Barley	extracellular	32.09	25.94
HORVU7Hr1G078960.2	Barley	extracellular	28.84	25.36
HORVU1Hr1G091430.5	Barley	extracellular	30.93	24.01

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	EnsemblPlantsGene:HORVU3Hr1G006180
EnsemblPlants:HORVU3Hr1G006180.2	InterPro:IPR012334	UniProt:M0VK96	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000294AEF8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:15206067..15208406

Molecular Weight (calculated)

45549.7 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.147

Length

430 amino acids

Sequence
(BLAST)

001: MALRARTTLL LAALAGAAAA LLLPGAVEAH VLLSLDDFGA VGDGIANDTH ALVDAWKAAC ATGGHTYLNV PVGKSYQIWP VTLAGPCRDE INLLISGNII
101: APESPEEWSD GDQGRWLHFR GVGDLSLSGG GIVDGRGQQW WAGTCEDENC TSHRQHEVAP MALHFEDCRD VSVKGITVQN AQRQHLAFTR CHGVEASYLR
201: VTSPEHSPAT VGVLVAGSTD VHIKHDLFSV GGDCVSIVGD SSDIKLKAIS CGPGLGISIG GLSQNQSDHR IHKIKTDTMF IANTKNGLSI YENGRGFVRK
301: VKFEHVMMRN VANPISIDQN RSASNRGTRR GTPNGSAAAV DRIKYIDIAG TSATERAVTF ACSDAMPCRR LYLDGVSLKA AGGGSTSAYC YQAFGKHAGD
401: VLPESCLGKE DFVQLQAPAA GTGDGEDDDW

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.