Factsheet for HORVU6Hr1G015390.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 1
vacuole 4
extracellular 4
endoplasmic reticulum 3
plasma membrane 4
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	91.1	91.1
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	91.1	91.1
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	87.88	88.38
Os02t0130200-01	Rice	extracellular, golgi	62.88	65.35
Zm00001d015129_P001	Maize	mitochondrion	61.17	62.6
EES04449	Sorghum	extracellular	60.98	61.92
GSMUA_Achr7P01870_001	Banana	cytosol	44.7	53.64
GSMUA_Achr4P22100_001	Banana	extracellular	46.78	53.23
CDY04708	Canola	plastid	27.46	52.35
Bra024602.1-P	Field mustard	cytosol	43.37	51.81
Bra012375.1-P	Field mustard	cytosol	43.18	51.12
CDY25786	Canola	cytosol	42.8	50.67
CDY54292	Canola	cytosol	42.8	50.67
AT1G23460.1	Thale cress	extracellular	43.94	50.43
Solyc04g025440.2.1	Tomato	extracellular	43.75	50.22
PGSC0003DMT400080722	Potato	extracellular	43.75	50.22
CDY11585	Canola	extracellular	44.32	50.11
AT1G70500.1	Thale cress	extracellular	44.32	50.0
Bra016345.1-P	Field mustard	extracellular	44.32	50.0
Bra016213.1-P	Field mustard	extracellular	44.13	49.89
CDY47139	Canola	extracellular	44.13	49.89
Solyc09g098270.2.1	Tomato	cytosol	40.72	49.65
PGSC0003DMT400055713	Potato	extracellular	42.42	48.91
CDY44150	Canola	extracellular, golgi, plastid	44.89	47.21
HORVU7Hr1G034150.1	Barley	extracellular	33.33	42.51
CDY41445	Canola	endoplasmic reticulum	44.51	42.27
HORVU3Hr1G024420.1	Barley	cytosol	17.23	40.81
HORVU5Hr1G109980.2	Barley	extracellular, plastid	34.47	40.53
HORVU5Hr1G109970.1	Barley	extracellular	31.82	40.48
HORVU3Hr1G031180.1	Barley	extracellular	10.8	40.43
HORVU1Hr1G013520.1	Barley	cytosol	29.92	40.2
HORVU2Hr1G096130.1	Barley	extracellular	29.73	38.77
HORVU0Hr1G038940.1	Barley	cytosol	29.55	38.61
HORVU1Hr1G067840.1	Barley	extracellular, plastid	32.01	35.5
HORVU1Hr1G079130.2	Barley	extracellular	28.6	34.79
HORVU3Hr1G006180.2	Barley	extracellular	28.22	34.65
HORVU1Hr1G079140.6	Barley	plastid	30.3	32.72
HORVU7Hr1G078960.2	Barley	extracellular	29.17	31.49
HORVU3Hr1G056270.10	Barley	extracellular	29.55	29.32
KRG99363	Soybean	extracellular	45.64	27.36
HORVU1Hr1G091430.5	Barley	extracellular	28.6	27.26

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	EnsemblPlantsGene:HORVU6Hr1G015390
EnsemblPlants:HORVU6Hr1G015390.2	InterPro:IPR012334	UniProt:M0YE71	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00029539A7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:33718879..33723970

Molecular Weight (calculated)

56109.2 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.279

Length

528 amino acids

Sequence
(BLAST)

001: MGRGRRRSGV GTAVPLPILV LLVLVLMAMA AAERADDADG VDVGGGEGED EAFERRFLKL WTDGGGGDEE DHLRWYGDDD DDRDYGDTYD DQEVEEAEEE
101: EEEEDDIMLG ATRCPRPKKK KKKRNVVKVD SFGAVGDGCA DDTEAFAKAW EKACSLKDAV LVVTAGRRYK VGPSKFMGPC KERLVVLIHG TIVAPEEPSQ
201: WDPKSPRLWL LFGGLVGARI QGGGVIDGSG SKWWANSCKV DRSKPCKGAP TAVTIDSCRG VRVRDLTIQN AQQMHLTVSR SRGVRLDGMA IQAPGDSPNT
301: DGIHVAESTA VTITGARIGT GDDCVSISNA SFAVKMKGIV CDPGHGISIG SLGQGGSYAA VEGVTLDGAR IARAQNGVRI KTWQGGAGYV RNVRFTNVLV
401: DAVDHPIIID QFYCDSRTPC ANRSTNVAVS NVMYRNISGT STRDEAIKLA CSDAVPCSDI VLSNINLLGD DGAEVQAVCN CAMGLGYDPV RPAVDCLRNN
501: ACGGGGGLKL GEEEEASTTT AAPLHTEL

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.