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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, extracellular
MultiLoc:extracellular
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0637500-00 Rice cytosol, extracellular 90.07 37.57
HORVU3Hr1G056270.10 Barley extracellular 100.0 26.5
TraesCS3D01G223900.1 Wheat extracellular 100.0 26.31
TraesCS3A01G225800.2 Wheat extracellular 100.0 26.16
TraesCS3B01G258600.2 Wheat extracellular 99.29 26.07
EES01142 Sorghum extracellular 89.36 23.68
Os01t0636500-01 Rice extracellular 90.07 23.61
Zm00001d011444_P002 Maize extracellular 89.36 23.29
Zm00001d044110_P001 Maize extracellular 89.36 23.25
GSMUA_Achr5P09080_001 Banana extracellular 72.34 20.94
GSMUA_Achr6P22080_001 Banana extracellular 70.92 20.62
HORVU1Hr1G091430.5 Barley extracellular 80.85 20.58
GSMUA_Achr4P02960_001 Banana extracellular 68.79 20.42
CDY34877 Canola extracellular, golgi 68.79 19.84
VIT_14s0066g01060.t01 Wine grape extracellular 65.96 19.25
GSMUA_Achr1P27280_001 Banana extracellular 69.5 19.22
Bra031724.1-P Field mustard extracellular 68.79 18.84
KRG93260 Soybean extracellular 58.87 18.74
VIT_01s0127g00400.t01 Wine grape extracellular, mitochondrion, plastid 68.79 18.73
HORVU3Hr1G024420.1 Barley cytosol 29.08 18.39
CDY54228 Canola extracellular, golgi, vacuole 68.79 18.37
CDY20962 Canola extracellular, golgi, vacuole 68.79 18.27
Bra018429.1-P Field mustard extracellular, golgi, vacuole 68.79 18.27
KRH56581 Soybean extracellular 56.74 18.22
KRH45648 Soybean nucleus 69.5 18.22
CDY20612 Canola extracellular 68.09 18.08
CDY37962 Canola extracellular, golgi, vacuole 68.09 18.05
Solyc07g015870.2.1 Tomato extracellular 57.45 18.04
KRG99364 Soybean extracellular, nucleus 68.79 18.03
CDX93397 Canola extracellular, golgi, vacuole 68.09 18.01
Bra019912.1-P Field mustard extracellular, golgi, vacuole 68.09 18.01
CDY09873 Canola extracellular 55.32 17.77
CDX69569 Canola extracellular 55.32 17.77
Bra008748.1-P Field mustard extracellular 55.32 17.77
CDY50367 Canola extracellular, golgi 67.38 17.72
CDY47212 Canola extracellular 67.38 17.72
PGSC0003DMT400077010 Potato cytosol 58.16 17.71
AT1G60590.1 Thale cress extracellular 67.38 17.59
Solyc05g005170.2.1 Tomato nucleus 63.12 17.52
AT5G14650.1 Thale cress extracellular 53.9 17.47
PGSC0003DMT400035162 Potato extracellular 63.12 17.42
Bra027148.1-P Field mustard extracellular 65.96 17.35
AT1G10640.1 Thale cress extracellular, golgi 63.12 16.73
HORVU7Hr1G078960.2 Barley extracellular 47.52 13.7
HORVU1Hr1G067840.1 Barley extracellular, plastid 46.1 13.66
HORVU1Hr1G013520.1 Barley cytosol 34.75 12.47
HORVU7Hr1G034150.1 Barley extracellular 36.17 12.32
HORVU5Hr1G109970.1 Barley extracellular 36.17 12.29
HORVU0Hr1G038940.1 Barley cytosol 34.75 12.13
HORVU5Hr1G109980.2 Barley extracellular, plastid 37.59 11.8
HORVU1Hr1G079130.2 Barley extracellular 33.33 10.83
HORVU6Hr1G015390.2 Barley extracellular, golgi 40.43 10.8
HORVU2Hr1G096130.1 Barley extracellular 30.5 10.62
HORVU3Hr1G006180.2 Barley extracellular 30.5 10.0
HORVU1Hr1G079140.6 Barley plastid 29.79 8.59
Protein Annotations
EnsemblPlants:HORVU3Hr1G031180.1EnsemblPlantsGene:HORVU3Hr1G031180Gene3D:2.160.20.10GO:GO:0003674GO:GO:0003824GO:GO:0004650
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798InterPro:Glyco_hydro_28
InterPro:IPR012334InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulencePANTHER:PTHR31375PANTHER:PTHR31375:SF56PFAM:PF00295
SUPFAM:SSF51126UniParc:UPI000B467748UniProt:A0A287KMQ3MapMan:50.3.2::
Description
No Description!
Coordinates
chrchr3H:+:153363699..153364369
Molecular Weight (calculated)
15549.7 Da
IEP (calculated)
7.754
GRAVY (calculated)
-0.011
Length
141 amino acids
Sequence
(BLAST)
001: MTGVRIKTWQ GGIGLVQDIR FSNIQVSEVQ TPIMIDQFYC DKRTCTNQTS AVAVSGVQYE NIRGTFTIKP LHFACSDSSP CSGITLTGVQ LKPVQIAHYH
101: LNNPFCWQAF GELFTPTIPP IACLQIGKPA GNNLQSYHDI C
Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)
001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.