Factsheet for Zm00001d044110_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01142	Sorghum	extracellular	92.8	94.55
Zm00001d011444_P002	Maize	extracellular	91.88	92.05
HORVU3Hr1G031180.1	Barley	extracellular	23.25	89.36
Os01t0637500-00	Rice	cytosol, extracellular	55.72	89.35
Os01t0636500-01	Rice	extracellular	83.39	84.01
TraesCS3D01G223900.1	Wheat	extracellular	80.26	81.16
HORVU3Hr1G056270.10	Barley	extracellular	79.52	81.02
TraesCS3A01G225800.2	Wheat	extracellular	80.44	80.89
TraesCS3B01G258600.2	Wheat	extracellular	79.52	80.26
GSMUA_Achr6P22080_001	Banana	extracellular	60.15	67.22
GSMUA_Achr5P09080_001	Banana	extracellular	57.93	64.48
GSMUA_Achr4P02960_001	Banana	extracellular	56.46	64.42
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	60.7	63.76
GSMUA_Achr1P27280_001	Banana	extracellular	57.75	61.37
AT5G14650.1	Thale cress	extracellular	48.34	60.23
KRG99364	Soybean	extracellular, nucleus	59.23	59.67
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	57.01	59.65
KRH45648	Soybean	nucleus	59.04	59.48
Bra008748.1-P	Field mustard	extracellular	48.16	59.45
CDY09873	Canola	extracellular	48.16	59.45
CDX69569	Canola	extracellular	48.16	59.45
Bra031724.1-P	Field mustard	extracellular	56.09	59.03
KRG93260	Soybean	extracellular	47.6	58.24
KRH56581	Soybean	extracellular	46.86	57.86
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	56.83	57.79
CDX93397	Canola	extracellular, golgi, vacuole	56.83	57.79
CDY54228	Canola	extracellular, golgi, vacuole	56.27	57.77
CDY37962	Canola	extracellular, golgi, vacuole	56.64	57.71
CDY20612	Canola	extracellular	55.9	57.06
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	55.9	57.06
CDY50367	Canola	extracellular, golgi	56.27	56.9
CDY47212	Canola	extracellular	56.27	56.9
CDY20962	Canola	extracellular, golgi, vacuole	55.72	56.87
PGSC0003DMT400035162	Potato	extracellular	53.32	56.56
VIT_14s0066g01060.t01	Wine grape	extracellular	50.37	56.52
Solyc05g005170.2.1	Tomato	nucleus	52.95	56.5
CDY34877	Canola	extracellular, golgi	50.92	56.44
Bra027148.1-P	Field mustard	extracellular	55.72	56.34
AT1G60590.1	Thale cress	extracellular	55.9	56.11
AT1G10640.1	Thale cress	extracellular, golgi	54.8	55.83
Solyc07g015870.2.1	Tomato	extracellular	44.65	53.9
PGSC0003DMT400077010	Potato	cytosol	44.28	51.84
Zm00001d045974_P001	Maize	extracellular	39.48	51.07
Zm00001d011156_P001	Maize	plastid	35.24	43.81
Zm00001d009057_P001	Maize	extracellular	31.92	40.9
Zm00001d040589_P001	Maize	extracellular	35.98	39.08
Zm00001d040725_P002	Maize	extracellular, vacuole	34.32	37.05
Zm00001d038874_P002	Maize	extracellular	27.68	36.41
Zm00001d034551_P001	Maize	extracellular	29.15	36.24
Zm00001d034552_P001	Maize	extracellular	29.15	35.83
Zm00001d015129_P001	Maize	mitochondrion	31.92	33.53
Zm00001d034559_P001	Maize	extracellular	29.15	33.26
Zm00001d048079_P001	Maize	extracellular	28.23	33.12
Zm00001d039668_P001	Maize	plastid	25.46	31.58
Zm00001d013032_P001	Maize	extracellular	28.04	31.21
Zm00001d038875_P001	Maize	extracellular	27.12	31.21
Zm00001d009167_P001	Maize	extracellular	35.61	25.2

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	UniProt:A0A1D6NHT4	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
ProteinID:ONM39941.1	ProteinID:ONM39942.1	ProteinID:ONM39943.1	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF56
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002211BCE	EnsemblPlantsGene:Zm00001d044110	EnsemblPlants:Zm00001d044110_P001	EnsemblPlants:Zm00001d044110_T001	SEG:seg

Description

Polygalacturonase

Coordinates

chr3:-:219541267..219545352

Molecular Weight (calculated)

58269.0 Da

IEP (calculated)

8.184

GRAVY (calculated)

-0.313

Length

542 amino acids

Sequence
(BLAST)

001: MKLGAKGLGL LLLLVLLALC STIEVGEARR DRHWRSSRTS SSQLLKKGKG KKTSSRRQYG SNRPSPKPPA SSTPSSGAGG KGNQTPYQPS PNAPHIPRPS
101: PPANGSAHST PKPPTPPSCG KAHQQPSQSQ PPPPATSSQH GAVFNVVDFG AKGDGVTDDT KAFQGAWAAA CTQGASTLLV PPELEFLVGP ISFSGPYCKP
201: NIVFQLEGTI LAPISAKSWG SGLLQWLEFT KLNGIVIQGN GIINGRGQQW WTYSDPEDED DDDTYHVEFQ RMPQIKPTAL RFYGSFNVVV SGITIVNSSQ
301: CHLKFDNCQG VMVHDVTISS PENSLNTDGI HLQNSKDVSI HHTTLACGDD CISIQTGCSN INIHNVNCGP GHGISIGGLG RDNTKACVSN VTVRDVNMFR
401: TMNGVRIKTW QGGVGLVQDI RFSNIQVSEV QTPIIIDQFY CDRSTCRNQT SAVAVSGVQY ENIRGTFTIK PVHFACSDSL PCSGISLTGV QLRPVQVPHY
501: HLNNPFCWQA FGELYTPTVP PIACLQIGKP AGNNLQSYDD IC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.