Factsheet for Bra027148.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47212	Canola	extracellular	98.13	98.13
CDY50367	Canola	extracellular, golgi	97.95	97.95
AT1G60590.1	Thale cress	extracellular	88.43	87.78
Bra031724.1-P	Field mustard	extracellular	76.68	79.81
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	77.8	78.24
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	76.12	76.84
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	66.23	68.53
Os05t0578600-01	Rice	cytosol, extracellular	39.55	67.95
Os01t0637500-00	Rice	cytosol, extracellular	41.79	66.27
HORVU3Hr1G031180.1	Barley	extracellular	17.35	65.96
KRH45648	Soybean	nucleus	65.67	65.43
KRG99364	Soybean	extracellular, nucleus	65.3	65.06
Solyc05g005170.2.1	Tomato	nucleus	61.38	64.76
GSMUA_Achr6P22080_001	Banana	extracellular	58.4	64.54
PGSC0003DMT400035162	Potato	extracellular	61.38	64.38
GSMUA_Achr5P09080_001	Banana	extracellular	57.46	63.24
GSMUA_Achr4P02960_001	Banana	extracellular	55.97	63.16
Bra008748.1-P	Field mustard	extracellular	49.07	59.91
GSMUA_Achr1P27280_001	Banana	extracellular	56.34	59.22
TraesCS1A01G418000.1	Wheat	extracellular	54.85	57.65
HORVU3Hr1G056270.10	Barley	extracellular	56.9	57.33
TraesCS3A01G225800.2	Wheat	extracellular	57.09	56.77
TraesCS3D01G223900.1	Wheat	extracellular	56.72	56.72
EES01142	Sorghum	extracellular	56.16	56.58
TraesCS3B01G258600.2	Wheat	extracellular	56.53	56.42
TraesCS1B01G448100.1	Wheat	extracellular	55.78	56.42
Os01t0636500-01	Rice	extracellular	56.34	56.13
EES20001	Sorghum	extracellular	56.16	56.05
Zm00001d044110_P001	Maize	extracellular	56.34	55.72
Zm00001d011444_P002	Maize	extracellular	55.97	55.45
TraesCS1D01G425600.1	Wheat	extracellular	54.1	55.03
HORVU1Hr1G091430.5	Barley	extracellular	55.6	53.79
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	51.49	53.49
Bra025216.1-P	Field mustard	extracellular	40.86	46.6
Bra018707.1-P	Field mustard	extracellular	37.69	42.8
Bra027926.1-P	Field mustard	extracellular	34.14	42.07
Bra032600.1-P	Field mustard	extracellular	36.75	40.12
Bra033328.1-P	Field mustard	extracellular	36.01	39.31
Bra000911.1-P	Field mustard	extracellular, vacuole	35.63	39.3
Bra016213.1-P	Field mustard	extracellular	32.09	36.83
Bra003555.1-P	Field mustard	extracellular	30.41	36.47
Bra024602.1-P	Field mustard	cytosol	29.85	36.2
Bra012375.1-P	Field mustard	cytosol	30.04	36.1
Bra025103.1-P	Field mustard	extracellular	26.87	36.0
Bra025099.1-P	Field mustard	extracellular	26.87	36.0
Bra029690.1-P	Field mustard	cytosol	27.24	35.96
Bra003286.1-P	Field mustard	extracellular	28.73	35.57
Bra025631.1-P	Field mustard	extracellular	27.99	35.55
Bra016345.1-P	Field mustard	extracellular	30.97	35.47
Bra007332.1-P	Field mustard	extracellular	28.36	35.19
Bra004655.1-P	Field mustard	extracellular	27.24	34.11
Bra001279.1-P	Field mustard	extracellular	27.8	34.1
Bra008493.1-P	Field mustard	extracellular	24.44	33.59
Bra016911.1-P	Field mustard	extracellular	27.05	33.49
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	26.87	32.14
Bra011341.1-P	Field mustard	cytosol	22.76	31.04
Bra001605.1-P	Field mustard	extracellular	25.37	30.09
Bra023600.1-P	Field mustard	extracellular	23.88	29.91
Bra027211.1-P	Field mustard	extracellular	24.44	29.05
Bra027210.1-P	Field mustard	extracellular	24.63	28.95
Bra008572.1-P	Field mustard	extracellular	22.76	28.11
Bra040077.1-P	Field mustard	extracellular	17.16	25.21

Protein Annotations

MapMan:50.3.2	EnsemblPlantsGene:Bra027148	EnsemblPlants:Bra027148.1	EnsemblPlants:Bra027148.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	UniProt:M4EED6	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF58	InterPro:PbH1	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix
UniParc:UPI00025426D6	SEG:seg	:	:	:	:

Description

AT1G60590 (E=4e-252) | polygalacturonase, putative / pectinase, putative

Coordinates

chrA09:+:8796713..8799149

Molecular Weight (calculated)

58543.8 Da

IEP (calculated)

6.835

GRAVY (calculated)

-0.210

Length

536 amino acids

Sequence
(BLAST)

001: MITRESQRLS SVTIMILMVT LVWSVTLQTC IARKGRHWRH HHSSSSSSST LSDSLSSKKP KSHHNSHSHK SKPQLKTPPP KSGSPVLPQP PQVQPPPSPQ
101: VQPPPPSPLP LQPLEGSQEF NVLDFGAKGD GMSDDTEAFE AAWASACKVE ASTMVIPPDY IFLVGPISFS GPYCQANIVF QLDGMIVAPT DSESWGRGLL
201: WWIEFTKLKG ITIQGNGVID GRGTGWWQQD NPFDYPIDDD FKLIVPLNNT VQERPPMPIR SELNGMPSIK PTALRFYGSI DVTVTGITIQ NSPQCHLKFD
301: NCVQVLVHDV TVSSPGDSPN TDGIHLQNTR DVMIHTSTLA CGDDCISIQT GCSNVYVHNV NCGPGHGISI GSLGKDSTKA CVSNITVRDV VMHNTMTGVR
401: IKTWQGGVGS VKGVLFSNIQ LTEVQLPIVI DQFYCDHSKC KNQSSAVSVE GVTYENIRGT YTVKPVHFAC SDSFPCVDVQ LSGIELKPVQ LQYHMYDPFC
501: WKAFGLLNSP TVPPIDCLQI GKPARNGVHT DHDVCV

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.