Factsheet for Bra016912.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, nucleus

Predictor Summary:

nucleus 2
plastid 1
extracellular 1
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016911.1-P	Field mustard	extracellular	91.74	94.92
CDY06902	Canola	extracellular	91.52	94.69
Bra004655.1-P	Field mustard	extracellular	80.36	84.11
AT2G41850.1	Thale cress	extracellular	78.12	80.83
Bra007332.1-P	Field mustard	extracellular	64.73	67.13
Bra003286.1-P	Field mustard	extracellular	63.17	65.36
KRH71979	Soybean	extracellular	52.9	55.37
Solyc04g015530.1.1	Tomato	cytosol	45.98	52.55
VIT_08s0007g07750.t01	Wine grape	extracellular	51.56	52.26
VIT_08s0007g07760.t01	Wine grape	extracellular	50.67	52.18
VIT_08s0007g08330.t01	Wine grape	extracellular	51.12	51.58
VIT_08s0007g07770.t01	Wine grape	extracellular	50.45	51.13
VIT_08s0007g07780.t01	Wine grape	extracellular	49.33	50.92
Bra029690.1-P	Field mustard	cytosol	44.87	49.51
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	43.53	49.12
KRH33163	Soybean	extracellular, plastid	51.79	48.64
KRH66955	Soybean	extracellular	48.66	46.98
HORVU0Hr1G038940.1	Barley	cytosol	42.19	46.78
Bra001279.1-P	Field mustard	extracellular	45.31	46.45
Solyc10g080210.1.1	Tomato	extracellular	47.32	46.39
PGSC0003DMT400070039	Potato	cytosol	42.19	46.1
TraesCS4A01G066700.1	Wheat	extracellular	43.08	44.57
TraesCS4B01G244300.1	Wheat	extracellular	43.08	44.57
TraesCS4D01G243600.1	Wheat	extracellular	42.63	44.11
GSMUA_Achr1P22940_001	Banana	extracellular	42.86	43.54
KXG39856	Sorghum	extracellular	41.52	43.26
Os03t0216800-01	Rice	extracellular	42.19	43.15
KRG95273	Soybean	extracellular	49.55	42.45
Bra003555.1-P	Field mustard	extracellular	40.85	40.94
Zm00001d048079_P001	Maize	extracellular	40.85	39.61
Bra024602.1-P	Field mustard	cytosol	38.62	39.14
Bra027926.1-P	Field mustard	extracellular	36.38	37.47
Bra012375.1-P	Field mustard	cytosol	37.28	37.44
Bra016213.1-P	Field mustard	extracellular	38.84	37.26
Bra025099.1-P	Field mustard	extracellular	33.26	37.25
Bra025103.1-P	Field mustard	extracellular	33.04	37.0
Bra016345.1-P	Field mustard	extracellular	38.62	36.97
Bra023600.1-P	Field mustard	extracellular	35.27	36.92
Bra008572.1-P	Field mustard	extracellular	34.82	35.94
Bra025631.1-P	Field mustard	extracellular	33.48	35.55
Bra008748.1-P	Field mustard	extracellular	34.6	35.31
Bra027211.1-P	Field mustard	extracellular	34.82	34.59
Bra027210.1-P	Field mustard	extracellular	34.6	33.99
Bra001605.1-P	Field mustard	extracellular	34.15	33.85
Bra011341.1-P	Field mustard	cytosol	29.24	33.33
Bra008493.1-P	Field mustard	extracellular	28.79	33.08
Bra018707.1-P	Field mustard	extracellular	34.82	33.05
Bra025216.1-P	Field mustard	extracellular	34.6	32.98
Bra000911.1-P	Field mustard	extracellular, vacuole	35.04	32.3
Bra032600.1-P	Field mustard	extracellular	35.04	31.98
Bra033328.1-P	Field mustard	extracellular	35.04	31.98
Bra031724.1-P	Field mustard	extracellular	32.59	28.35
Bra040077.1-P	Field mustard	extracellular	22.54	27.67
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	32.37	27.31
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	32.37	27.2
Bra027148.1-P	Field mustard	extracellular	32.14	26.87

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EnsemblPlantsGene:Bra016912	EnsemblPlants:Bra016912.1	EnsemblPlants:Bra016912.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DK83	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0002543705	SEG:seg	:	:	:	:

Description

AT2G41850 (E=2e-206) PGAZAT, ADPG2 | PGAZAT (POLYGALACTURONASE ABSCISSION ZONE A. THALIANA); polygalacturonase

Coordinates

chrA04:-:17635719..17638306

Molecular Weight (calculated)

47850.0 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.533

Length

448 amino acids

Sequence
(BLAST)

001: MAERGGERGA ERGGDRGGFG RGFGGGRGDR GGRGETRETS RNNINRYDHS YGTFKSNSLI KRRDDITRLK SVARASLRLP TTVSVSDFGA KGDGKTDDTQ
101: AFVNAWKKAC SSSGAVNLLV PEGKTYFLKS LRLNGPCKSV LTVQILGTLS ASQQRSDYED LSKWITFDGV NSLTVDGGAT GTVNGNGETW WENSCKRNEA
201: KKCTKAPTAL TFYNSKNLRV NNLRVKDAQQ IQISIEKCSN VQVSNVEVTA PADSPNTDGI HITNTQNIQV SNSIIGTGDD CISIESGSQN VKINDLTCGP
301: GHGISIGSLG DDNSKAFVSG VTVDGAKLSG TDNGVRIKTY QGGSGTASNI IFQNIQMENV KNPIIIDQDY CDKSKCTEQK SAVQIKNVVY RNISGTSASD
401: IAITFNCSKN YPCQGIVLDK VNIKGGKASC SNANVMDKDG VLPQCKST

Best Arabidopsis Sequence Match ( AT2G41850.1 )
(BLAST)

001: MARCTNLVTV FLLWALLMFS WCKASRISPN VYDHSYKRFK SDSLIKRRED ITGLRSFVRA SLRTPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSNGA
101: VNLLVPKGNT YLLKSIQLTG PCNSILTVQI FGTLSASQKR SDYKDISKWI MFDGVNNLSV DGGDTGVVDG NGETWWQNSC KRNKAKPCTK APTALTFYNS
201: KSLIVKNLKV RNAQQIQISI EKCSNVQVSN VVVTAPADSP NTDGIHITNT QNIRVSESII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK
301: AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMDNVKNPII IDQDYCDKSK CTTEKSAVQV KNVVYRDISG TSASENAITF NCSKNYPCQG
401: IVLDRVNIKG GKATCTNANV VDKGAVLPQC NST

Arabidopsis Description

ADPG2Polygalacturonase ADPG2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY29]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.