Factsheet for VIT_08s0007g07780.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07770.t01	Wine grape	extracellular	95.39	93.67
VIT_08s0007g07750.t01	Wine grape	extracellular	93.32	91.63
VIT_08s0007g07760.t01	Wine grape	extracellular	91.47	91.26
VIT_08s0007g08330.t01	Wine grape	extracellular	80.88	79.05
KRH71979	Soybean	extracellular	58.06	58.88
Solyc04g015530.1.1	Tomato	cytosol	53.0	58.67
VIT_13s0064g00760.t01	Wine grape	cytosol	42.4	55.42
KRH66955	Soybean	extracellular	57.6	53.88
AT2G41850.1	Thale cress	extracellular	53.69	53.81
KRH33163	Soybean	extracellular, plastid	58.53	53.25
AT3G57510.1	Thale cress	extracellular	52.77	53.13
CDX72025	Canola	extracellular	52.53	52.78
Bra004655.1-P	Field mustard	extracellular	51.84	52.57
PGSC0003DMT400070039	Potato	cytosol	49.31	52.2
Bra003286.1-P	Field mustard	extracellular	52.07	52.19
CDX67693	Canola	extracellular	52.07	52.19
CDY14791	Canola	extracellular	51.84	51.96
Bra007332.1-P	Field mustard	extracellular	51.61	51.85
Bra016911.1-P	Field mustard	extracellular	51.61	51.73
CDX79907	Canola	extracellular	51.84	51.72
CDY48768	Canola	extracellular	51.84	51.72
CDY06902	Canola	extracellular	51.38	51.5
VIT_13s0064g00750.t01	Wine grape	cytosol	53.69	51.1
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	46.54	50.88
Solyc10g080210.1.1	Tomato	extracellular	52.77	50.11
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	50.92	49.33
KRG95273	Soybean	extracellular	57.83	47.99
HORVU0Hr1G038940.1	Barley	cytosol	42.63	45.79
GSMUA_Achr1P22940_001	Banana	extracellular	46.31	45.58
TraesCS4A01G066700.1	Wheat	extracellular	44.01	44.11
Os03t0216800-01	Rice	extracellular	44.01	43.61
KXG39856	Sorghum	extracellular	43.09	43.49
TraesCS4B01G244300.1	Wheat	extracellular	43.32	43.42
TraesCS4D01G243600.1	Wheat	extracellular	43.32	43.42
CDY61868	Canola	extracellular	50.69	40.07
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	33.87	39.62
VIT_09s0002g06650.t01	Wine grape	extracellular	36.87	39.6
Zm00001d048079_P001	Maize	extracellular	41.47	38.96
VIT_09s0002g06380.t01	Wine grape	cytosol	36.64	38.41
CDY06100	Canola	extracellular	37.56	38.17
VIT_17s0000g05660.t01	Wine grape	extracellular	33.18	37.21
VIT_09s0002g06610.t01	Wine grape	extracellular	33.18	37.02
VIT_17s0000g05670.t01	Wine grape	extracellular	33.41	36.9
VIT_09s0002g06580.t01	Wine grape	cytosol	33.18	36.83
VIT_14s0060g00620.t01	Wine grape	extracellular	37.1	34.7
VIT_07s0005g02090.t01	Wine grape	extracellular	36.41	33.98
VIT_14s0066g01060.t01	Wine grape	extracellular	37.56	33.75
VIT_05s0020g00420.t01	Wine grape	extracellular	35.71	32.49
VIT_01s0127g00120.t01	Wine grape	extracellular	33.41	30.27
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	35.02	29.34

Protein Annotations

EntrezGene:100250296	wikigene:100250296	Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EMBL:AM476808	ProteinID:CAN83753
ProteinID:CAN83753.1	ProteinID:CCB55176	ProteinID:CCB55176.1	UniProt:F6HL69	EMBL:FN595991	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100250296	wikigene:LOC100250296
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002109B55
ArrayExpress:VIT_08s0007g07780	EnsemblPlantsGene:VIT_08s0007g07780	EnsemblPlants:VIT_08s0007g07780.t01	RefSeq:XP_002277234	RefSeq:XP_002277234.1	:

Description

No Description!

Coordinates

chr8:-:21222994..21225534

Molecular Weight (calculated)

46358.3 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.236

Length

434 amino acids

Sequence
(BLAST)

001: MSLQRRFIPF LIVFLLSFPC YYGLQGNPPY DYLDDAYGYA SSQAYDKRPW RKFGSKIMGS KRIGEVGRSL ASVTTVNVND YGAKGDGSDA TEAFKKAWEA
101: ACSSQGSVLV VPKNNYLLKP ITFEGPCKSS ITVQIYGTLQ ASTDRSAYSN DLTRWLVFEN VQNLAVQGGG TINGNGKIWW ENSCKVDDDL ALTFYNCKNL
201: VVKNLKIENA QQIHVSFEKC VGVQASGLTV TAPGDSPNTD GIHVTDTQNI QISSSVIGTG DDCISIVSGT QNLQATGITC GPGHGISIGS LGYGNSEALV
301: SDITVNGATL SGTTNGVRIK TWPGGSGSAS NIKFQNIEMH DVDNPIIINQ KYCDDDKPCE SESQAVQVQN VLYQNIKGTS SSSEAIQLDC SSKFPCQGIV
401: LQDIDIETGG GKAATAVCND AKVTEKGDVS PSCT

Best Arabidopsis Sequence Match ( AT2G41850.1 )
(BLAST)

001: MARCTNLVTV FLLWALLMFS WCKASRISPN VYDHSYKRFK SDSLIKRRED ITGLRSFVRA SLRTPTTVSV SDFGAKGDGK TDDTQAFVNA WKKACSSNGA
101: VNLLVPKGNT YLLKSIQLTG PCNSILTVQI FGTLSASQKR SDYKDISKWI MFDGVNNLSV DGGDTGVVDG NGETWWQNSC KRNKAKPCTK APTALTFYNS
201: KSLIVKNLKV RNAQQIQISI EKCSNVQVSN VVVTAPADSP NTDGIHITNT QNIRVSESII GTGDDCISIE SGSQNVQIND ITCGPGHGIS IGSLGDDNSK
301: AFVSGVTVDG AKLSGTDNGV RIKTYQGGSG TASNIIFQNI QMDNVKNPII IDQDYCDKSK CTTEKSAVQV KNVVYRDISG TSASENAITF NCSKNYPCQG
401: IVLDRVNIKG GKATCTNANV VDKGAVLPQC NST

Arabidopsis Description

ADPG2Polygalacturonase ADPG2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY29]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.