Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g05660.t01 | Wine grape | extracellular | 58.02 | 58.91 |
| Solyc03g113230.1.1 | Tomato | extracellular | 46.31 | 44.28 |
| VIT_09s0002g06610.t01 | Wine grape | extracellular | 41.73 | 42.16 |
| VIT_09s0096g00850.t01 | Wine grape | cytoskeleton, cytosol, peroxisome | 38.93 | 41.24 |
| Bra025631.1-P | Field mustard | extracellular | 43.77 | 40.76 |
| VIT_09s0002g06580.t01 | Wine grape | cytosol | 40.46 | 40.66 |
| CDY56952 | Canola | extracellular | 43.51 | 40.62 |
| VIT_09s0002g06650.t01 | Wine grape | extracellular | 41.48 | 40.35 |
| CDX74418 | Canola | extracellular | 43.26 | 40.28 |
| AT5G39910.1 | Thale cress | extracellular | 38.17 | 40.21 |
| VIT_13s0064g00760.t01 | Wine grape | cytosol | 32.57 | 38.55 |
| VIT_08s0007g07760.t01 | Wine grape | extracellular | 37.91 | 34.25 |
| VIT_08s0007g07750.t01 | Wine grape | extracellular | 38.42 | 34.16 |
| VIT_09s0002g06380.t01 | Wine grape | cytosol | 35.88 | 34.06 |
| Zm00001d039668_P001 | Maize | plastid | 37.66 | 33.87 |
| VIT_08s0007g08330.t01 | Wine grape | extracellular | 37.91 | 33.56 |
| VIT_08s0007g07780.t01 | Wine grape | extracellular | 36.9 | 33.41 |
| VIT_08s0007g07770.t01 | Wine grape | extracellular | 37.4 | 33.26 |
| VIT_14s0060g00620.t01 | Wine grape | extracellular | 38.68 | 32.76 |
| VIT_13s0064g00750.t01 | Wine grape | cytosol | 37.66 | 32.46 |
| VIT_07s0005g02090.t01 | Wine grape | extracellular | 37.91 | 32.04 |
| VIT_05s0020g00420.t01 | Wine grape | extracellular | 37.91 | 31.24 |
| VIT_14s0066g01060.t01 | Wine grape | extracellular | 37.91 | 30.85 |
| VIT_01s0127g00120.t01 | Wine grape | extracellular | 37.15 | 30.48 |
| Os01t0172900-00 | Rice | nucleus | 22.39 | 29.83 |
| VIT_01s0127g00400.t01 | Wine grape | extracellular, mitochondrion, plastid | 37.91 | 28.76 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | ProteinID:CBI15273 | ProteinID:CBI15273.3 | UniProt:D7SIG2 | EMBL:FN594950 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 |
| PANTHER:PTHR31375:SF41 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | UniParc:UPI00015CB38C | ArrayExpress:VIT_17s0000g05670 | EnsemblPlantsGene:VIT_17s0000g05670 | EnsemblPlants:VIT_17s0000g05670.t01 | RefSeq:XP_002267182 |
| RefSeq:XP_002267182.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr17:+:6154649..6156718
Molecular Weight (calculated)
43152.1 Da
IEP (calculated)
6.271
GRAVY (calculated)
-0.140
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRLEILFL VSLFSVLLTP LHCSVFDVTQ YGAIGNGSTD DSPAFMLAWT DVCNSSASTP IFHIPGNKTF LLNPVFFQGP CRSTNIQFQI DGIITAESEP
101: SNWKCTRNRC DKWIHFKRVD GLFINGSGII DGNGKNWWSS GYINALEVTS SNKVQLTGLS FRNNPHMHVV FDSCDMVHIS NVSIDAPGDS PNTDGIHLKE
201: STHVNIEFCS IRTGDDCISI VDKCSNITIQ NIECGPGHGI SIGSMGQYGA YETVENIYVS DVQFKGSLSG VRIKTWQGGK GHARKMVFKG ITSLNTQYPI
301: QIDQFYCPHA KCDEQADAVE ISDISYIDIK GTSMRKTAVK LACSESVPCK NIFMQDINLS YQGTNASAYC KNVNGTSQGI MEPSVPCLYY QTS
101: SNWKCTRNRC DKWIHFKRVD GLFINGSGII DGNGKNWWSS GYINALEVTS SNKVQLTGLS FRNNPHMHVV FDSCDMVHIS NVSIDAPGDS PNTDGIHLKE
201: STHVNIEFCS IRTGDDCISI VDKCSNITIQ NIECGPGHGI SIGSMGQYGA YETVENIYVS DVQFKGSLSG VRIKTWQGGK GHARKMVFKG ITSLNTQYPI
301: QIDQFYCPHA KCDEQADAVE ISDISYIDIK GTSMRKTAVK LACSESVPCK NIFMQDINLS YQGTNASAYC KNVNGTSQGI MEPSVPCLYY QTS
001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR
Arabidopsis Description
Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.