Factsheet for VIT_05s0020g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P06220_001	Banana	extracellular	71.91	73.29
KRH11881	Soybean	extracellular	73.17	72.86
KRH36916	Soybean	extracellular, nucleus	72.33	72.78
AT1G48100.1	Thale cress	extracellular	71.91	72.21
CDY43307	Canola	extracellular	71.07	71.67
Bra018707.1-P	Field mustard	extracellular	70.86	71.61
CDX93644	Canola	extracellular	70.86	71.61
PGSC0003DMT400075723	Potato	extracellular	72.75	71.4
Solyc04g008230.2.1	Tomato	nucleus	72.75	70.82
Os05t0279900-00	Rice	cytosol	46.33	70.16
KRH42407	Soybean	extracellular	70.65	69.63
KRH58524	Soybean	extracellular	70.02	68.16
GSMUA_Achr8P22240_001	Banana	extracellular	67.71	67.71
TraesCS7D01G326800.1	Wheat	extracellular	64.36	62.91
TraesCS7A01G330000.1	Wheat	extracellular	64.15	62.7
TraesCS7B01G230600.1	Wheat	extracellular	63.73	62.42
HORVU7Hr1G078960.2	Barley	extracellular	63.52	61.96
VIT_07s0005g02090.t01	Wine grape	extracellular	57.65	59.14
VIT_14s0060g00620.t01	Wine grape	extracellular	54.93	56.47
Zm00001d040725_P002	Maize	extracellular, vacuole	56.39	53.59
KXG32428	Sorghum	mitochondrion	56.6	51.92
VIT_14s0066g01060.t01	Wine grape	extracellular	41.09	40.58
KXG32426	Sorghum	extracellular	58.7	40.46
VIT_01s0127g00120.t01	Wine grape	extracellular	39.83	39.67
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	42.77	39.38
VIT_13s0064g00760.t01	Wine grape	cytosol	27.04	38.86
VIT_17s0000g05670.t01	Wine grape	extracellular	31.24	37.91
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	29.35	37.74
VIT_09s0002g06380.t01	Wine grape	cytosol	32.49	37.44
VIT_09s0002g06610.t01	Wine grape	extracellular	30.4	37.28
VIT_08s0007g08330.t01	Wine grape	extracellular	34.59	37.16
Os01t0329300-01	Rice	plastid	58.7	36.89
VIT_09s0002g06650.t01	Wine grape	extracellular	31.24	36.88
VIT_08s0007g07750.t01	Wine grape	extracellular	34.17	36.88
VIT_08s0007g07760.t01	Wine grape	extracellular	33.33	36.55
Zm00001d009167_P001	Maize	extracellular	58.07	36.16
VIT_08s0007g07770.t01	Wine grape	extracellular	33.33	35.97
VIT_08s0007g07780.t01	Wine grape	extracellular	32.49	35.71
VIT_09s0002g06580.t01	Wine grape	cytosol	29.14	35.55
VIT_13s0064g00750.t01	Wine grape	cytosol	33.12	34.65
VIT_17s0000g05660.t01	Wine grape	extracellular	28.09	34.63

Protein Annotations

EntrezGene:100263206	wikigene:100263206	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:AM465280	ProteinID:CAN70358
ProteinID:CAN70358.1	ProteinID:CCB50272	ProteinID:CCB50272.1	UniProt:F6HE14	EMBL:FN595749	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009831	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	GO:GO:0040007	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100263206	wikigene:LOC100263206	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF26	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC54436	TIGR:TC60648	UniParc:UPI0001983356	ArrayExpress:VIT_05s0020g00420
EnsemblPlantsGene:VIT_05s0020g00420	EnsemblPlants:VIT_05s0020g00420.t01	unigene:Vvi.13579	RefSeq:XP_002263668	RefSeq:XP_002263668.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:2340670..2343110

Molecular Weight (calculated)

51299.4 Da

IEP (calculated)

4.506

GRAVY (calculated)

-0.186

Length

477 amino acids

Sequence
(BLAST)

001: MGVFRGVLVV WIVVSVFLHD SSNVEGRTHF HKKHNNDKGS PVADPPAYSP DPSPPPVYPP PVPSDPSPNP DDPGNSNSEP CVFDVTSFGA VGDGTTDDTA
101: AFMEAWKAAC AVESGIVLVP ADHVFMITST IFSGPCKPGL VFQVDGVLMP PNGPDCWPKS DSKKQWLVFY RLDQMTFTGS GTIEGNGGDW WELPCKPHRG
201: PNGSTLPGPC DSPALIRFFM SSNLVVSSLR IQNSPQFHMK FDGCEGVLIE KLSISSPKLS PNTDGIHIEN TKSVGIYNSE IGNGDDCISI GRGCSDVNIE
301: GVTCGPSHGI SIGSLGVQNS QACVSNITVR NVFIKDSDNG VRIKTWQGGT GSVSGISFEN IQMENVRNCM IIDQYYCLSK ACRNQTSAVY LTDVTYRNIK
401: GTYDVRSPPI HFACSDTVAC TNITMSEVEL LPAEGELVDD PFCWNAYGTQ ETLTIPPITC LQDGMPESLA ESSSYGC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.