Factsheet for VIT_09s0002g06610.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g06580.t01	Wine grape	cytosol	59.64	59.34
VIT_09s0002g06650.t01	Wine grape	extracellular	50.64	48.76
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	42.42	44.47
PGSC0003DMT400056828	Potato	extracellular	43.44	42.46
PGSC0003DMT400008955	Potato	extracellular	37.79	42.24
VIT_17s0000g05670.t01	Wine grape	extracellular	42.16	41.73
VIT_13s0064g00760.t01	Wine grape	cytosol	34.7	40.66
VIT_17s0000g05660.t01	Wine grape	extracellular	39.33	39.53
TraesCS2B01G423400.1	Wheat	plastid	34.96	38.75
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	39.85	38.27
TraesCS2D01G402100.1	Wheat	extracellular	39.85	38.27
GSMUA_Achr4P13200_001	Banana	extracellular	41.39	38.15
TraesCS2D01G402200.1	Wheat	extracellular	38.3	38.11
GSMUA_Achr11P...	Banana	extracellular	40.62	37.98
CDX75843	Canola	extracellular	44.22	37.97
AT3G15720.1	Thale cress	extracellular	44.47	37.94
TraesCS2B01G423300.1	Wheat	extracellular	39.07	37.91
Bra001605.1-P	Field mustard	extracellular	43.96	37.83
Bra027211.1-P	Field mustard	extracellular	43.7	37.69
CDY30105	Canola	extracellular	43.44	37.64
CDX97703	Canola	extracellular	43.7	37.61
GSMUA_Achr9P22320_001	Banana	extracellular	39.85	37.53
CDY58462	Canola	extracellular	43.7	37.53
CDY30107	Canola	extracellular	43.7	37.28
CDX97704	Canola	extracellular	43.7	37.28
Bra027210.1-P	Field mustard	extracellular	43.7	37.28
TraesCS2A01G405600.1	Wheat	extracellular	30.33	36.99
HORVU2Hr1G096130.1	Barley	extracellular	38.05	36.54
TraesCS2D01G402300.1	Wheat	extracellular	30.85	36.04
KXG26899	Sorghum	extracellular	38.82	35.95
TraesCS2A01G405100.1	Wheat	extracellular	38.3	35.73
TraesCS2B01G423200.1	Wheat	extracellular	38.3	35.06
TraesCS2D01G402000.1	Wheat	extracellular	38.3	34.81
VIT_09s0002g06380.t01	Wine grape	cytosol	36.5	34.3
VIT_08s0007g08330.t01	Wine grape	extracellular	38.82	34.01
VIT_08s0007g07760.t01	Wine grape	extracellular	37.28	33.33
VIT_08s0007g07780.t01	Wine grape	extracellular	37.02	33.18
VIT_08s0007g07750.t01	Wine grape	extracellular	37.53	33.03
Zm00001d039668_P001	Maize	plastid	37.02	32.95
VIT_13s0064g00750.t01	Wine grape	cytosol	38.56	32.89
VIT_14s0060g00620.t01	Wine grape	extracellular	39.07	32.76
VIT_08s0007g07770.t01	Wine grape	extracellular	37.02	32.58
VIT_14s0066g01060.t01	Wine grape	extracellular	38.3	30.85
VIT_05s0020g00420.t01	Wine grape	extracellular	37.28	30.4
VIT_07s0005g02090.t01	Wine grape	extracellular	35.22	29.46
VIT_01s0127g00120.t01	Wine grape	extracellular	35.22	28.6
Os01t0172900-00	Rice	nucleus	21.59	28.47
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	37.53	28.19
GSMUA_Achr4P06370_001	Banana	extracellular	43.44	22.41

Protein Annotations

EntrezGene:100255950	wikigene:100255950	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:AM430851	ProteinID:CAN62658
ProteinID:CAN62658.1	ProteinID:CCB59593	ProteinID:CCB59593.1	UniProt:F6HXC3	EMBL:FN596494	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100255950	wikigene:LOC100255950	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126
UniParc:UPI00015CD1FD	ArrayExpress:VIT_09s0002g06610	EnsemblPlantsGene:VIT_09s0002g06610	EnsemblPlants:VIT_09s0002g06610.t01	RefSeq:XP_002266797	RefSeq:XP_002266797.2

Description

No Description!

Coordinates

chr9:-:6544703..6547518

Molecular Weight (calculated)

41980.2 Da

IEP (calculated)

8.840

GRAVY (calculated)

-0.085

Length

389 amino acids

Sequence
(BLAST)

001: MASSGSSNVA LNGRTTTFNV LDFGAIGDGV TDDSQAFLKA WNAVCTARTT SAMLIIQRKK TFLLSPTVFS GPCKPPQIHV LVLGDITAPK TRSAWGRSSY
101: WLIFQYIDGF IINGKGTLDG QGSSWWPSLY YKQELLNDTN SYALGFSFCN NLQIYGLNVI NSPSKHVKLF RCNGAILSNL NIKAPKESPN TDGIVIGECS
201: QIQVHDNNIG TGDDCVAILK GSSNINISRV ACGPGHGISI GSLGMNGAYD TVEEIHVQDC SFTGTQNGIR IKTWQGGSGY ARKISFQGIT LNAAENPIII
301: DQYYCPQLHC PNKTSAVKVS DISYAGVQGT SMTKTAINLR CSQSMACTNI ELKRINITSV GQKFVTSSFC LNAHGRASRS IPNLRCLMK

Best Arabidopsis Sequence Match ( AT3G15720.1 )
(BLAST)

001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.