Factsheet for TraesCS2A01G405300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G402100.1	Wheat	extracellular	93.33	93.33
TraesCS2B01G423300.1	Wheat	extracellular	92.35	93.27
HORVU2Hr1G096130.1	Barley	extracellular	82.47	82.47
TraesCS2A01G405600.1	Wheat	extracellular	63.7	80.88
TraesCS2A01G405100.1	Wheat	extracellular	77.53	75.3
KXG26899	Sorghum	extracellular	60.99	58.81
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	36.05	42.07
GSMUA_Achr11P...	Banana	extracellular	42.72	41.59
KRH23786	Soybean	cytosol, extracellular, nucleus, plastid	36.79	41.39
TraesCS5A01G459000.1	Wheat	extracellular	41.48	41.08
AT4G35670.1	Thale cress	extracellular	39.75	40.86
CDY50769	Canola	extracellular	34.07	40.35
CDY39404	Canola	extracellular	39.51	40.1
KRH66273	Soybean	extracellular	30.62	40.0
KRG88958	Soybean	extracellular	35.06	40.0
Bra025099.1-P	Field mustard	extracellular	39.51	40.0
CDY69377	Canola	extracellular	39.51	40.0
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	36.54	39.89
VIT_09s0002g06610.t01	Wine grape	extracellular	38.27	39.85
AT5G44830.1	Thale cress	extracellular	32.59	39.76
KRH66276	Soybean	extracellular	34.81	39.72
VIT_09s0002g06650.t01	Wine grape	extracellular	39.51	39.6
CDX73440	Canola	extracellular	39.01	39.5
TraesCS5A01G459100.1	Wheat	extracellular	40.49	39.42
KRH48978	Soybean	extracellular	28.89	39.26
Bra025103.1-P	Field mustard	extracellular	38.52	39.0
AT5G44840.1	Thale cress	extracellular	37.53	38.87
CDY39399	Canola	extracellular	38.27	38.75
TraesCS7A01G162500.1	Wheat	extracellular	40.0	38.57
TraesCS3A01G129500.1	Wheat	extracellular	38.27	38.08
CDY47032	Canola	extracellular	37.78	37.97
TraesCS4A01G066700.1	Wheat	extracellular	40.25	37.64
TraesCS3A01G129400.1	Wheat	extracellular	38.02	37.56
Solyc08g060970.2.1	Tomato	nucleus	36.79	37.53
CDX72553	Canola	extracellular	37.28	37.47
KRH23567	Soybean	extracellular	37.04	37.41
PGSC0003DMT400008955	Potato	extracellular	32.1	37.36
VIT_09s0002g06580.t01	Wine grape	cytosol	36.05	37.34
PGSC0003DMT400056828	Potato	extracellular	36.54	37.19
TraesCS1A01G124300.1	Wheat	extracellular, plastid	39.01	36.49
CDX85471	Canola	extracellular	36.54	36.45
KRH05150	Soybean	extracellular	24.2	36.43
KRH09740	Soybean	extracellular	37.78	36.0
Solyc03g116580.2.1	Tomato	extracellular	38.52	35.7
TraesCS1A01G364800.2	Wheat	extracellular	36.3	35.51
AT5G17200.1	Thale cress	extracellular	36.54	35.15
CDY02729	Canola	extracellular	37.04	35.05
Bra023600.1-P	Field mustard	extracellular	36.79	34.81
CDY16952	Canola	extracellular	37.04	34.56
Bra008572.1-P	Field mustard	extracellular	37.04	34.56
KRH66305	Soybean	extracellular	32.84	34.55
Bra001605.1-P	Field mustard	extracellular	38.27	34.29
CDX75843	Canola	extracellular	38.27	34.22
CDY30105	Canola	extracellular	37.78	34.08
CDY58462	Canola	extracellular	37.78	33.77
Bra027211.1-P	Field mustard	extracellular	37.53	33.7
CDX69397	Canola	extracellular	33.58	33.66
CDX97703	Canola	extracellular	37.04	33.19
AT3G15720.1	Thale cress	extracellular	37.28	33.11
Bra011341.1-P	Field mustard	cytosol	32.1	33.08
CDX97704	Canola	extracellular	36.79	32.68
CDY30107	Canola	extracellular	36.79	32.68
Bra027210.1-P	Field mustard	extracellular	36.54	32.46
CDX68839	Canola	cytosol	32.35	32.27
CDX75239	Canola	cytosol	32.1	32.02
TraesCS1A01G365300.1	Wheat	extracellular	34.07	31.72
AT5G27530.1	Thale cress	cytosol	35.31	31.22
TraesCS3A01G024500.1	Wheat	extracellular	34.07	31.22
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	40.25	31.05
AT4G32370.1	Thale cress	extracellular	25.93	30.7
TraesCS1A01G365200.1	Wheat	extracellular	34.57	30.5
TraesCS1A01G311100.1	Wheat	extracellular	35.8	29.96
TraesCS1A01G418000.1	Wheat	extracellular	36.79	29.22
CDY39884	Canola	extracellular	31.6	28.76
AT4G32380.1	Thale cress	extracellular	31.85	28.48
TraesCS7A01G330000.1	Wheat	extracellular	34.07	28.28
Bra040077.1-P	Field mustard	extracellular	25.43	28.22
TraesCS3A01G225800.2	Wheat	extracellular	37.28	28.01
AT4G32375.1	Thale cress	extracellular	23.7	22.7

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF45	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G405300	EnsemblPlants:TraesCS2A01G405300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:661151262..661153770

Molecular Weight (calculated)

42763.8 Da

IEP (calculated)

9.020

GRAVY (calculated)

-0.034

Length

405 amino acids

Sequence
(BLAST)

001: MGIIGIRTAI LFLAALAWCS VLAAAAAGEV DGVFNVKDYG ARGDGVTDDT KAFVHAWTAA CGARGSSAST LLVPAAKSFL VGPTRFNGPC ASTRITVQVM
101: GTITAPPAGA WSGKNYWLMF YKVHGLTVTG GSTGLLDGRG WTWWRNKCKG YADCVTKAPT ALVVMSCADV ELRQFRSKDS PQMHIAVSQS SKVHLTQLTI
201: TAPGDSPNTD GVHISQSENV HVSRSTIGTG DDCVSISSRS RFVTVDGIVC GPGHGVSVGS LGRNGATASV EYIDVKNVHF INTTNGARIK TWQGGKGYAK
301: SISFTDIKFT NVDHPVVINQ FYVDHHHVPN MGAVALSNIT YKNLRGTSKH KTAVDFNCGE SGSCTNIHVN SVAITAADGG RTVSRCQNAQ GDTSGYVYPK
401: IPCLK

Best Arabidopsis Sequence Match ( AT4G35670.1 )
(BLAST)

001: MKTILDISIL INFLCFGIVY GKNYNVLNFD AKGDGQTDDS EAFLQAWTAA CGGDGDIKTL LIPSGKTFLL QPTVFQGPCK SSSIKVQLDG TIVAPSDKFA
101: WSDPISRMWI KFSTVSGLII VGSGTIDSRG SSFWELNLKA SQRPTALHIS KCDNLRINGI TSIDSPKNHI SIKTCNTVAI SNINLFAPET SPNTDGIDIS
201: DSTNINIFDS TIQTGDDCIA INSGSSNINI TGINCGPGHG ISVGSLGAGG AEAKVSDVQV THCTFNQTTN GARIKTWLGG QGYARNISFT DITLVNTKNP
301: IIIDQHYIDK GRLTEESAVA ISNVKFVDFR GTSSNKNAIT LKCSETTHCV DVVMDGIDIT MANGGKPKVN CQYVDGESSD TDLMRDCFKN NTSS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JN47]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.