Factsheet for TraesCS1A01G124300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G142700.1	Wheat	plastid	97.46	95.91
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	68.36	91.36
TraesCS7A01G162500.1	Wheat	extracellular	85.68	88.33
TraesCS5A01G459100.1	Wheat	extracellular	56.58	58.89
TraesCS5A01G459000.1	Wheat	extracellular	54.73	57.95
TraesCS4A01G066700.1	Wheat	extracellular	41.8	41.8
TraesCS1A01G364800.2	Wheat	extracellular	37.41	39.13
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	36.49	39.01
TraesCS2A01G405600.1	Wheat	extracellular	28.18	38.24
TraesCS2A01G405100.1	Wheat	extracellular	36.49	37.89
TraesCS3A01G129500.1	Wheat	extracellular	35.33	37.59
TraesCS3A01G129400.1	Wheat	extracellular	35.1	37.07
TraesCS1A01G311100.1	Wheat	extracellular	36.95	33.06
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	38.8	32.0
TraesCS3A01G024500.1	Wheat	extracellular	32.56	31.9
TraesCS7A01G330000.1	Wheat	extracellular	35.57	31.56
TraesCS1A01G365300.1	Wheat	extracellular	31.18	31.03
TraesCS1A01G365200.1	Wheat	extracellular	32.79	30.94
TraesCS1A01G418000.1	Wheat	extracellular	35.1	29.8
TraesCS3A01G225800.2	Wheat	extracellular	36.03	28.94

Protein Annotations

EnsemblPlants:TraesCS1A01G124300.1	EnsemblPlantsGene:TraesCS1A01G124300	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF39	PFAM:PF00295
ScanProsite:PS00502	SEG:seg	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr1A:+:146944702..146946619

Molecular Weight (calculated)

47460.5 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.196

Length

433 amino acids

Sequence
(BLAST)

001: MMEYLIPSVS APTAHTKCAQ MASIVPLFSL LSLFLCCVLA KKDMKVAPLT NWADHRDRSL QSNHVFSVLR YGAYGDGRHD DTKALSKAWA AACSSLNPST
101: VLIPKGKKCL TKHVTFFGPC KSSIKLMIEG TLVAPPKRSY WIEDTIRHWI LFRSVRGLTV TGGGTIDGNG KFWWQNSCKV NTKLALTFYS CTNLKVNNLE
201: VLNSQQIHIS MERCSDVRMS RLSIRAPSTS PNTDGIHIAH SKDVKVMDCA IKTGDDCMSI EDGTENLHVK NIVCGPGHGI SIGSLGDRNS QAQVANITID
301: GVRLHDTANG ARIKTWQGGR GYAKNIVFKN MIMDNVRNPI IIDQNYCDSA TPCNKQKVAV EVSNLLFKNI RGTSASREAI KLSCSKAVPC HGIALHNVRL
401: TLKRGGGDAK STCQNAKWRK LGTVMPQPCS LND

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.