Factsheet for TraesCS3A01G129400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G148500.1	Wheat	extracellular	91.22	93.27
TraesCS3D01G130300.1	Wheat	extracellular	90.98	93.02
TraesCS3A01G129500.1	Wheat	extracellular	77.32	77.89
KXG31745	Sorghum	extracellular	58.05	55.22
Zm00001d039668_P001	Maize	plastid	58.54	54.92
Os01t0172900-00	Rice	nucleus	34.15	47.46
GSMUA_AchrUn_...	Banana	extracellular	30.24	43.06
GSMUA_AchrUn_...	Banana	mitochondrion	38.29	38.57
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	37.56	38.02
TraesCS2A01G405600.1	Wheat	extracellular	29.51	37.93
TraesCS7A01G162500.1	Wheat	extracellular	37.8	36.9
TraesCS2A01G405100.1	Wheat	extracellular	37.32	36.69
TraesCS5A01G459100.1	Wheat	extracellular	36.1	35.58
TraesCS5A01G459000.1	Wheat	extracellular	35.12	35.21
TraesCS1A01G124300.1	Wheat	extracellular, plastid	37.07	35.1
TraesCS1A01G364800.2	Wheat	extracellular	33.9	33.57
TraesCS4A01G066700.1	Wheat	extracellular	33.9	32.1
TraesCS1A01G311100.1	Wheat	extracellular	34.88	29.55
TraesCS1A01G418000.1	Wheat	extracellular	36.34	29.22
TraesCS1A01G365200.1	Wheat	extracellular	31.46	28.1
TraesCS1A01G365300.1	Wheat	extracellular	29.02	27.36
TraesCS7A01G330000.1	Wheat	extracellular	32.2	27.05
TraesCS3A01G225800.2	Wheat	extracellular	34.88	26.53
TraesCS3A01G024500.1	Wheat	extracellular	28.54	26.47
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	33.66	26.29

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3A01G129400	EnsemblPlants:TraesCS3A01G129400.1	SEG:seg

Description

No Description!

Coordinates

chr3A:-:106661093..106663310

Molecular Weight (calculated)

44235.7 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.182

Length

410 amino acids

Sequence
(BLAST)

001: MRAAAGHGAS FLALPLLLLL VVSAEARSAA AAGRRKGEGT RYSVMAFHAA GDGKTDDSKA FEETWDSACR DSGGATVYVP EGRTFLLGET KLQGPCKSPI
101: TMQVDGDIVA PSSIWGLKSL TSLLAFYRVD NLTVDGSGQI DGRGAPWWDC YNKKKCHYRP QLVSFSFCNG LRVTNIRLKD SADKHMSVFE CSQVQVHNVT
201: VVAPRDSPNT DGITMGASDH VRISSCNIHS GDDCVSILTG TTDVNVTDVM CGPGHGISVG SLGGAGEKQT MVERITVSNC NFFNTMTGVR IKSWQGGRGK
301: ANTFLFTDLN MTEVRYPIYI DQFYCPQGNC PEREGGVAIT DARFINIRGT SSEQEAIQIL CSKSVPCHGI FLHNVDLSWA NHTAPTKAKI LNAQGRVAGK
401: VKPQVRFRGL

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.