Factsheet for TraesCS3A01G129500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G148600.1	Wheat	extracellular	95.82	94.66
TraesCS3D01G130400.1	Wheat	extracellular	93.37	92.23
HORVU3Hr1G024420.1	Barley	cytosol	45.95	83.86
TraesCS3A01G129400.1	Wheat	extracellular	77.89	77.32
Zm00001d039668_P001	Maize	plastid	57.99	54.0
KXG31745	Sorghum	extracellular	56.76	53.6
Os01t0172900-00	Rice	nucleus	32.68	45.08
GSMUA_AchrUn_...	Banana	extracellular	29.48	41.67
TraesCS7A01G162500.1	Wheat	extracellular	39.56	38.33
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	38.08	38.27
TraesCS2A01G405600.1	Wheat	extracellular	29.98	38.24
GSMUA_AchrUn_...	Banana	mitochondrion	36.61	36.61
TraesCS2A01G405100.1	Wheat	extracellular	37.1	36.21
TraesCS5A01G459000.1	Wheat	extracellular	36.36	36.19
TraesCS1A01G124300.1	Wheat	extracellular, plastid	37.59	35.33
TraesCS5A01G459100.1	Wheat	extracellular	35.87	35.1
TraesCS1A01G364800.2	Wheat	extracellular	33.91	33.33
TraesCS4A01G066700.1	Wheat	extracellular	35.38	33.26
TraesCS1A01G311100.1	Wheat	extracellular	35.63	29.96
TraesCS1A01G365200.1	Wheat	extracellular	32.68	28.98
TraesCS1A01G418000.1	Wheat	extracellular	35.38	28.24
TraesCS1A01G365300.1	Wheat	extracellular	29.98	28.05
TraesCS7A01G330000.1	Wheat	extracellular	33.17	27.66
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	35.63	27.62
TraesCS3A01G024500.1	Wheat	extracellular	29.48	27.15
TraesCS3A01G225800.2	Wheat	extracellular	34.4	25.97

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3A01G129500	EnsemblPlants:TraesCS3A01G129500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:106676627..106678931

Molecular Weight (calculated)

43594.6 Da

IEP (calculated)

7.319

GRAVY (calculated)

-0.123

Length

407 amino acids

Sequence
(BLAST)

001: MRRTSLFLVL PLLLLLVVSA TVRSAAAAAT KVWKGEGTRY SVMAFHAAGD GETDDSKAFE ETWESACRDS GGANVYVPAG RTFLLRDATF NGPCKSPITM
101: QVDGDIVAPS TLWQLRSSSV LTFHEVDNLT VDGSGQIDGR GAPWWDCHNH KKCSVRPMLV SFSFCNGLRV TNIRLKDSAL KHISVYRCSQ ALVHNVSISA
201: PGDSPNTDGI TIGASHHVRV SSSSIQSGDD CVSIITGTTD VNVTDITCGP GHGISVGSLG GAGEGPAMVE RITVSNCKFF NTTNGVRIKS WQGGQGKASG
301: FIFRDLNMTE VQHPIDIDQF YCPHGNCPER QGGVAITDAR FINIHGTSSE REAIKIMCSN SVPCHDIYLD NVDLSCCRHT APPKAKALNA HGSVAGTVEP
401: QVRFLGR

Best Arabidopsis Sequence Match ( AT1G78400.1 )
(BLAST)

001: MVSTISGFSL ILFIAAVASS ISAAPSAALV GRKVFDVRSY GARGDGKTDN TMAFTKAWKD ACQWKGLPRV YIPFGTFYLG AVAFTGPCKS RISFIIKGTL
101: LAPKDPNAIK QDSWIIFRYV DYLTVSGGGI LDGQGSYSWP LNNCRQTHNC RALPMNMGFQ FVRFSRLTRI KSINSKMGHL NFFSVQHFDI TRVNIKAPGD
201: SPNTDGIKIG SSNHMKIHHV DIATGDDCIA ILSGTFNLDI NKVNCGPGHG ISVGSLGKFK GEKSVQGLIV RNSIFNGTSN GVRIKTWPSP GEPNLVSNFL
301: FKNLQMIDVQ SPINIDQRYC PNPPCSFQSF SKIQIRDVKF QNIWGTSTAK EAVKLQCSKN VPCKNVQLFN INIVHRGRDG PATSVCENVG GWIGGKISPP
401: SCIR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IA77]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.