Factsheet for HORVU3Hr1G024420.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G129500.1	Wheat	extracellular	83.86	45.95
TraesCS3B01G148600.1	Wheat	extracellular	82.51	44.66
TraesCS3D01G130400.1	Wheat	extracellular	82.06	44.42
Zm00001d039668_P001	Maize	plastid	63.23	32.27
KXG31745	Sorghum	extracellular	62.33	32.25
GSMUA_AchrUn_...	Banana	extracellular	40.81	31.6
HORVU3Hr1G031180.1	Barley	extracellular	18.39	29.08
Os01t0172900-00	Rice	nucleus	32.29	24.41
HORVU1Hr1G013520.1	Barley	cytosol	41.7	23.66
HORVU2Hr1G096130.1	Barley	extracellular	41.26	22.72
HORVU0Hr1G038940.1	Barley	cytosol	40.81	22.52
HORVU7Hr1G034150.1	Barley	extracellular	41.7	22.46
GSMUA_AchrUn_...	Banana	mitochondrion	40.81	22.36
HORVU5Hr1G109970.1	Barley	extracellular	39.91	21.45
HORVU5Hr1G109980.2	Barley	extracellular, plastid	42.15	20.94
HORVU6Hr1G015390.2	Barley	extracellular, golgi	40.81	17.23
HORVU1Hr1G067840.1	Barley	extracellular, plastid	36.77	17.23
HORVU1Hr1G079130.2	Barley	extracellular	31.84	16.36
HORVU7Hr1G078960.2	Barley	extracellular	35.43	16.16
HORVU1Hr1G091430.5	Barley	extracellular	38.12	15.34
HORVU1Hr1G079140.6	Barley	plastid	33.63	15.34
HORVU3Hr1G056270.10	Barley	extracellular	36.32	15.23
HORVU3Hr1G006180.2	Barley	extracellular	28.25	14.65

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	EnsemblPlantsGene:HORVU3Hr1G024420	EnsemblPlants:HORVU3Hr1G024420.1
InterPro:IPR012334	UniProt:M0XIX4	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI000294A4D8

Description

No Description!

Coordinates

chrchr3H:+:94225305..94226514

Molecular Weight (calculated)

23699.9 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.211

Length

223 amino acids

Sequence
(BLAST)

001: MYKCSHAQVN NVSITAPGDS PNTDGITMGG CSHVHISSCS IQSGDDCVSI LTGTTDVNVT DITCGPGHGI SVGSLGADGE GPAMVESVTV SNCNFFNTMN
101: GVRIKSWQGG EGKANGFIFR DLNMTEVQYP IDIDQFYCPH GNCPERQGGV AITDARFINI QGTSSEREAI KIICSKSVPC HDIHLDNVDI SWCRHTAAPQ
201: AKVLNAHGSV TGRVKPQVRF SGR

Best Arabidopsis Sequence Match ( AT1G43080.1 )
(BLAST)

001: MVSIASTFKA LCLSFLFIAV ASRPTIRPKV FNVRRYGSRP DGKTDNANAF TSVWKRACTR ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FVIDGTLLAP
101: ANPRDIKQDT WINFRYINNL SISGSGTLDG QGKYSWPLND CHKNTNCPKL AMTMGFAFVN NSRIKDITSL NSKMGHFNFF SVHRFNITGV TITAPGDSPN
201: TDGIKMGSCS NIHISNTNIG TGDDCIAILS GTTNLDISNI KCGPGHGISV GSLGKNKDEK DVKHLTVRDT VFNGTSDGIR IKTWESSASK IVVSNFIYEN
301: IQMIDVGKPI NIDQKYCPHP PCEHEKKGES HVQIQDIKLK NIYGTSNNIV AVNLQCSKSF PCKNVELIDI NLKHTGLEKG HSTAMCENVD GSVRSKMVPQ
401: HCLD

Arabidopsis Description

Glycoside hydrolase family 28 protein [Source:UniProtKB/TrEMBL;Acc:Q9C8C4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.