Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G370800.1 | Wheat | extracellular | 92.17 | 92.17 |
| TraesCS1B01G382800.1 | Wheat | extracellular | 91.71 | 91.71 |
| TraesCS1A01G365300.1 | Wheat | extracellular | 91.47 | 91.26 |
| HORVU3Hr1G006180.2 | Barley | extracellular | 80.41 | 81.16 |
| Os05t0542900-01 | Rice | extracellular | 66.59 | 64.94 |
| Zm00001d038875_P001 | Maize | extracellular | 62.44 | 57.54 |
| KXG22449 | Sorghum | extracellular, golgi | 61.98 | 57.48 |
| HORVU1Hr1G079140.6 | Barley | plastid | 58.06 | 51.53 |
| KRH09752 | Soybean | extracellular | 41.47 | 39.3 |
| VIT_09s0002g06380.t01 | Wine grape | cytosol | 36.87 | 38.65 |
| Solyc03g116500.2.1 | Tomato | nucleus | 39.4 | 37.83 |
| PGSC0003DMT400001638 | Potato | extracellular, plastid | 38.94 | 37.64 |
| GSMUA_Achr3P13670_001 | Banana | extracellular | 38.71 | 36.92 |
| Solyc06g068040.2.1 | Tomato | nucleus | 36.87 | 36.61 |
| CDY54312 | Canola | extracellular | 37.33 | 36.49 |
| Bra003555.1-P | Field mustard | extracellular | 37.33 | 36.24 |
| CDY57689 | Canola | extracellular | 37.33 | 36.24 |
| AT1G80170.1 | Thale cress | extracellular | 36.18 | 35.36 |
| HORVU0Hr1G038940.1 | Barley | cytosol | 32.26 | 34.65 |
| HORVU5Hr1G109970.1 | Barley | extracellular | 32.26 | 33.73 |
| HORVU3Hr1G031180.1 | Barley | extracellular | 10.83 | 33.33 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 30.88 | 33.09 |
| HORVU1Hr1G013520.1 | Barley | cytosol | 29.95 | 33.08 |
| HORVU7Hr1G034150.1 | Barley | extracellular | 31.34 | 32.85 |
| HORVU3Hr1G024420.1 | Barley | cytosol | 16.36 | 31.84 |
| HORVU5Hr1G109980.2 | Barley | extracellular, plastid | 32.72 | 31.63 |
| HORVU1Hr1G067840.1 | Barley | extracellular, plastid | 34.33 | 31.3 |
| HORVU6Hr1G015390.2 | Barley | extracellular, golgi | 34.79 | 28.6 |
| HORVU3Hr1G056270.10 | Barley | extracellular | 32.72 | 26.69 |
| HORVU7Hr1G078960.2 | Barley | extracellular | 29.03 | 25.77 |
| HORVU1Hr1G091430.5 | Barley | extracellular | 32.49 | 25.45 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EMBL:AK368523 | UniProt:F2DXA5 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 |
| InterPro:Glyco_hydro_28 | EnsemblPlantsGene:HORVU1Hr1G079130 | EnsemblPlants:HORVU1Hr1G079130.2 | InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31375 |
| PANTHER:PTHR31375:SF4 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI00020079D9 | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DXA5]
Coordinates
chrchr1H:-:522435389..522438471
Molecular Weight (calculated)
46049.3 Da
IEP (calculated)
4.999
GRAVY (calculated)
-0.095
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLRASMAPR LLAALAGAVA AVALLLLPGA AEARVLLSLD DFGAVGDGIA NDTQALVDAW KAACAAGDNT YLNVPAGKSY QIWPVTLAGP CRGEIKLMIS
101: GNIVAPESPE EWADGDQGRW LHFTGVGDLS LSGGGIVDGR GQQWWAGSCE DENCTSYRQH EVAPKALHFE DCQDVSVKGI TVQNSQREHL VFTRCYNVEA
201: NYLRVTSPEY SPGTAGVLVV SSTNVHIKDD LFSVGGDCVS IVGNCSDVRL RAISCGPGLG ISIGGLGENQ TSHKIEKIKT DTMFISNTKN GVRVKTYENG
301: CGFARKVKFA QIMMRNVANP IIIDQHYSAS NRGTHCGAPN GSAVAVENIN YIDITGTSAT EQAVTFACSD AMPCRRLYLD GVNLTTVGGG NTSAYCHQAF
401: GKHVGNVLPE SCLGKEDFVQ LQAPTTGDEE DADW
101: GNIVAPESPE EWADGDQGRW LHFTGVGDLS LSGGGIVDGR GQQWWAGSCE DENCTSYRQH EVAPKALHFE DCQDVSVKGI TVQNSQREHL VFTRCYNVEA
201: NYLRVTSPEY SPGTAGVLVV SSTNVHIKDD LFSVGGDCVS IVGNCSDVRL RAISCGPGLG ISIGGLGENQ TSHKIEKIKT DTMFISNTKN GVRVKTYENG
301: CGFARKVKFA QIMMRNVANP IIIDQHYSAS NRGTHCGAPN GSAVAVENIN YIDITGTSAT EQAVTFACSD AMPCRRLYLD GVNLTTVGGG NTSAYCHQAF
401: GKHVGNVLPE SCLGKEDFVQ LQAPTTGDEE DADW
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.