Factsheet for GSMUA_Achr3P13670_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 1
extracellular 2
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003555.1-P	Field mustard	extracellular	52.31	53.24
CDY54312	Canola	extracellular	51.87	53.15
CDY57689	Canola	extracellular	51.87	52.8
AT1G80170.1	Thale cress	extracellular	51.21	52.48
Solyc06g068040.2.1	Tomato	nucleus	50.33	52.4
VIT_09s0002g06380.t01	Wine grape	cytosol	47.47	52.17
KRH09752	Soybean	extracellular	50.99	50.66
PGSC0003DMT400001638	Potato	extracellular, plastid	49.89	50.56
Solyc03g116500.2.1	Tomato	nucleus	49.67	50.0
Zm00001d038874_P002	Maize	extracellular	43.08	47.57
EES18597	Sorghum	extracellular	41.98	46.81
TraesCS1D01G370300.3	Wheat	extracellular	42.2	46.72
TraesCS1B01G382200.2	Wheat	extracellular	41.32	45.41
TraesCS1A01G364800.2	Wheat	extracellular	41.1	45.17
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	39.34	45.09
Os05t0542800-02	Rice	extracellular	42.2	45.07
TraesCS1D01G370700.1	Wheat	extracellular	39.12	42.48
TraesCS1B01G382700.1	Wheat	extracellular	38.68	42.0
GSMUA_Achr1P22940_001	Banana	extracellular	40.22	41.5
GSMUA_Achr7P01870_001	Banana	cytosol	39.34	40.68
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	34.07	40.58
Os05t0542900-01	Rice	extracellular	39.12	40.0
TraesCS3B01G020300.1	Wheat	extracellular	38.24	39.28
GSMUA_AchrUn_...	Banana	extracellular	24.84	39.24
GSMUA_Achr4P22100_001	Banana	extracellular	40.0	39.22
HORVU1Hr1G079130.2	Barley	extracellular	36.92	38.71
TraesCS1A01G365200.1	Wheat	extracellular	38.9	38.56
TraesCS1D01G370800.1	Wheat	extracellular	36.7	38.48
TraesCS1B01G382800.1	Wheat	extracellular	36.7	38.48
TraesCS3A01G024500.1	Wheat	extracellular	37.36	38.46
TraesCS3D01G021700.1	Wheat	extracellular	37.14	38.32
TraesCS1A01G365300.1	Wheat	extracellular	36.26	37.93
GSMUA_Achr11P...	Banana	extracellular	36.04	37.61
HORVU3Hr1G006180.2	Barley	extracellular	34.73	36.74
HORVU1Hr1G079140.6	Barley	plastid	38.9	36.2
Zm00001d038875_P001	Maize	extracellular	36.92	35.67
KXG22449	Sorghum	extracellular, golgi	36.48	35.47
GSMUA_Achr9P22320_001	Banana	extracellular	31.87	35.11
GSMUA_Achr11P...	Banana	extracellular	32.09	35.1
GSMUA_Achr8P06220_001	Banana	extracellular	35.82	34.83
GSMUA_AchrUn_...	Banana	mitochondrion	30.99	34.64
GSMUA_Achr2P14330_001	Banana	extracellular	34.29	34.36
GSMUA_Achr4P13200_001	Banana	extracellular	31.43	33.89
GSMUA_Achr8P22240_001	Banana	extracellular	35.16	33.54
GSMUA_Achr5P09080_001	Banana	extracellular	35.16	32.85
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	35.82	32.53
GSMUA_Achr6P22080_001	Banana	extracellular	34.51	32.37
GSMUA_Achr1P12720_001	Banana	extracellular	29.01	32.2
GSMUA_Achr4P02960_001	Banana	extracellular	33.41	32.0
GSMUA_Achr1P27280_001	Banana	extracellular	35.16	31.37
GSMUA_Achr3P08400_001	Banana	extracellular	36.26	29.36
GSMUA_Achr4P06370_001	Banana	extracellular	34.07	20.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr3G13670_001	EnsemblPlants:GSMUA_Achr3P13670_001	EnsemblPlants:GSMUA_Achr3T13670_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SED4	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF91	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
TMHMM:TMhelix	UniParc:UPI0002960254	:	:	:	:

Description

Probable polygalacturonase At1g80170 [Source:GMGC_GENE;Acc:GSMUA_Achr3G13670_001]

Coordinates

chr3:+:12309444..12313097

Molecular Weight (calculated)

49420.0 Da

IEP (calculated)

9.440

GRAVY (calculated)

-0.152

Length

455 amino acids

Sequence
(BLAST)

001: MVDDQYVIFV RNRSSSKDAT SRSVIAAILL LLYPIMIGRA KGLPESSSLV QLPRSADHKT KVVISVTEFG AKGNGFDDDT LAFKYAWDYA CSSPLHVEIK
101: FPARRVYLIK PINLAGPCNS KITVSISGTI IAPSDPDIWD GLDPRKWIYF HGIKQIVVRG GGTLDGKGQN WWSRSCKRNT TYPCRHAPTA ITFHRSKHVA
201: IRDLTVLNGQ QMHIAFTSCS HVRASRLKVT APAESPNTDG IHISGSIATL VEDSTIRAGD DCISIVGNSS NVRVINIICG PGHGISIGSL GKSNSYSQVH
301: DVKVENSLIS NTENGVRIKT WQGGSGYARK IVFRGIRMSN VSNPIIIDQY YCDSSRQCQN QTSAVKVHQI SFIEIKGTST TKDAIKFSCS DSSPCEKIYL
401: QDINMSLESG GNASAYCWKA SGFSSGLVNP PSCLTRAVVG LINQNVGSSK KVEVA

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.