Factsheet for GSMUA_Achr6P22080_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09080_001	Banana	extracellular	83.92	83.57
GSMUA_Achr1P27280_001	Banana	extracellular	82.89	78.82
GSMUA_Achr4P02960_001	Banana	extracellular	73.2	74.74
Os05t0578600-01	Rice	cytosol, extracellular	46.19	71.79
HORVU3Hr1G031180.1	Barley	extracellular	20.62	70.92
Os01t0637500-00	Rice	cytosol, extracellular	48.87	70.12
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	68.66	64.29
Solyc05g005170.2.1	Tomato	nucleus	65.77	62.8
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	49.28	62.57
PGSC0003DMT400035162	Potato	extracellular	65.57	62.23
EES01142	Sorghum	extracellular	67.63	61.65
HORVU3Hr1G056270.10	Barley	extracellular	67.22	61.28
TraesCS3D01G223900.1	Wheat	extracellular	67.63	61.19
TraesCS1A01G418000.1	Wheat	extracellular	64.33	61.18
Os01t0636500-01	Rice	extracellular	67.84	61.15
TraesCS3A01G225800.2	Wheat	extracellular	67.84	61.04
Zm00001d011444_P002	Maize	extracellular	68.04	61.0
TraesCS3B01G258600.2	Wheat	extracellular	67.42	60.89
EES20001	Sorghum	extracellular	67.01	60.52
TraesCS1B01G448100.1	Wheat	extracellular	65.98	60.38
Zm00001d044110_P001	Maize	extracellular	67.22	60.15
KRH56581	Soybean	extracellular	54.43	60.14
KRG93260	Soybean	extracellular	54.85	60.05
AT5G14650.1	Thale cress	extracellular	53.61	59.77
KRG99364	Soybean	extracellular, nucleus	66.19	59.67
TraesCS1D01G425600.1	Wheat	extracellular	64.54	59.39
KRH45648	Soybean	nucleus	65.77	59.29
CDY09873	Canola	extracellular	53.61	59.23
Bra008748.1-P	Field mustard	extracellular	53.4	59.0
CDX69569	Canola	extracellular	53.4	59.0
CDY47212	Canola	extracellular	64.74	58.58
Bra027148.1-P	Field mustard	extracellular	64.54	58.4
CDY37962	Canola	extracellular, golgi, vacuole	63.92	58.27
CDY50367	Canola	extracellular, golgi	64.33	58.21
Bra031724.1-P	Field mustard	extracellular	61.65	58.06
HORVU1Hr1G091430.5	Barley	extracellular	65.98	57.76
CDX93397	Canola	extracellular, golgi, vacuole	63.3	57.6
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	63.3	57.6
VIT_14s0066g01060.t01	Wine grape	extracellular	57.32	57.56
GSMUA_Achr2P14330_001	Banana	extracellular	53.81	57.49
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	62.89	57.44
CDY20612	Canola	extracellular	62.68	57.25
CDY20962	Canola	extracellular, golgi, vacuole	62.68	57.25
AT1G60590.1	Thale cress	extracellular	63.71	57.22
CDY54228	Canola	extracellular, golgi, vacuole	62.06	57.01
CDY34877	Canola	extracellular, golgi	56.29	55.83
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	58.97	55.43
AT1G10640.1	Thale cress	extracellular, golgi	60.62	55.26
Solyc07g015870.2.1	Tomato	extracellular	51.13	55.23
PGSC0003DMT400077010	Potato	cytosol	50.93	53.35
GSMUA_Achr1P12720_001	Banana	extracellular	39.59	46.83
GSMUA_Achr8P06220_001	Banana	extracellular	41.65	43.16
GSMUA_Achr11P...	Banana	extracellular	37.73	41.97
GSMUA_Achr8P22240_001	Banana	extracellular	40.82	41.51
GSMUA_AchrUn_...	Banana	extracellular	23.71	39.93
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	39.59	38.32
GSMUA_Achr7P01870_001	Banana	cytosol	33.61	37.05
GSMUA_AchrUn_...	Banana	mitochondrion	30.93	36.85
GSMUA_Achr4P22100_001	Banana	extracellular	34.23	35.78
GSMUA_Achr11P...	Banana	extracellular	30.31	35.34
GSMUA_Achr1P22940_001	Banana	extracellular	31.96	35.15
GSMUA_Achr3P08400_001	Banana	extracellular	40.62	35.05
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	28.25	34.51
GSMUA_Achr3P13670_001	Banana	extracellular	32.37	34.51
GSMUA_Achr4P13200_001	Banana	extracellular	29.69	34.12
GSMUA_Achr9P22320_001	Banana	extracellular	26.8	31.48
GSMUA_Achr4P06370_001	Banana	extracellular	30.31	19.5

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr6G22080_001	EnsemblPlants:GSMUA_Achr6P22080_001	EnsemblPlants:GSMUA_Achr6T22080_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0T956	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI00029689B7	SEG:seg	:	:	:	:

Description

Putative Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22080_001]

Coordinates

chr6:-:18851583..18855192

Molecular Weight (calculated)

52393.3 Da

IEP (calculated)

7.434

GRAVY (calculated)

-0.204

Length

485 amino acids

Sequence
(BLAST)

001: MAGCRLTCFG LLLLVLLLVC SNFDGCEGRK GKHWSLKKPS YSSLARKKGR GKHGGGHSHG GGGGGHQSPA PSPKPSPPPK TGYTTKAAAT FDVLDFGAKG
101: DGVTDDTKAF QAAWAAACKV GGSTMVVPEE YEFLVGPISF SGPYCQPNIV FQLDGMIIAP TDARYWGSGL LWWIEFTKLR GITIQGSGVI EGRGSVWWTN
201: GESDVDPINE ELSKNLPQIK PTALRFYGSY NVTVTGITIQ NSQQCHLKFD NCEAVQVFNM TIASPGSSLN TDGIHLQNSR DVMIHHTNMS CGDDCISIQT
301: GCSNINIHRV DCGPGHGISI GGLGRDNTKA CVSNITVRDV NMHNTMTGVR IKTWQGGSGS VQNIIFSNIG VSEVQTPIVI DQFYCDRSSC KNQTSAVTLS
401: GIAYENIRGT YTVKPVHFAC SDASPCSDIS LTKIQLEPLQ EHYHMYQPFC WQAFGELYTP TVPPIVCLQN GKPTSNHILS DRDLC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.