Factsheet for Bra018429.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20962	Canola	extracellular, golgi, vacuole	98.68	98.68
CDY20612	Canola	extracellular	97.93	97.93
Bra031724.1-P	Field mustard	extracellular	88.51	91.26
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	90.77	90.43
AT1G10640.1	Thale cress	extracellular, golgi	86.06	85.9
Bra027148.1-P	Field mustard	extracellular	76.84	76.12
HORVU3Hr1G031180.1	Barley	extracellular	18.27	68.79
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	66.86	68.53
Os05t0578600-01	Rice	cytosol, extracellular	38.98	66.35
PGSC0003DMT400035162	Potato	extracellular	63.65	66.14
Solyc05g005170.2.1	Tomato	nucleus	63.28	66.14
Os01t0637500-00	Rice	cytosol, extracellular	41.24	64.79
KRG99364	Soybean	extracellular, nucleus	64.78	63.94
KRH45648	Soybean	nucleus	64.41	63.57
GSMUA_Achr5P09080_001	Banana	extracellular	58.0	63.24
GSMUA_Achr6P22080_001	Banana	extracellular	57.44	62.89
GSMUA_Achr4P02960_001	Banana	extracellular	56.12	62.74
Bra008748.1-P	Field mustard	extracellular	50.47	61.05
GSMUA_Achr1P27280_001	Banana	extracellular	56.12	58.43
TraesCS3A01G225800.2	Wheat	extracellular	57.82	56.96
EES01142	Sorghum	extracellular	56.87	56.77
HORVU3Hr1G056270.10	Barley	extracellular	56.87	56.77
TraesCS1A01G418000.1	Wheat	extracellular	54.05	56.27
TraesCS3D01G223900.1	Wheat	extracellular	56.69	56.16
Zm00001d044110_P001	Maize	extracellular	57.06	55.9
EES20001	Sorghum	extracellular	56.5	55.87
TraesCS3B01G258600.2	Wheat	extracellular	56.31	55.68
Zm00001d011444_P002	Maize	extracellular	56.69	55.64
Os01t0636500-01	Rice	extracellular	56.31	55.58
TraesCS1B01G448100.1	Wheat	extracellular	55.37	55.47
TraesCS1D01G425600.1	Wheat	extracellular	54.24	54.65
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	51.98	53.49
HORVU1Hr1G091430.5	Barley	extracellular	55.56	53.25
Bra025216.1-P	Field mustard	extracellular	39.92	45.11
Bra018707.1-P	Field mustard	extracellular	38.61	43.43
Bra027926.1-P	Field mustard	extracellular	34.27	41.84
Bra032600.1-P	Field mustard	extracellular	38.04	41.14
Bra033328.1-P	Field mustard	extracellular	37.1	40.12
Bra000911.1-P	Field mustard	extracellular, vacuole	36.35	39.71
Bra003555.1-P	Field mustard	extracellular	31.07	36.91
Bra025099.1-P	Field mustard	extracellular	27.68	36.75
Bra025631.1-P	Field mustard	extracellular	29.0	36.49
Bra029690.1-P	Field mustard	cytosol	27.87	36.45
Bra025103.1-P	Field mustard	extracellular	27.31	36.25
Bra024602.1-P	Field mustard	cytosol	29.76	35.75
Bra003286.1-P	Field mustard	extracellular	29.0	35.57
Bra016213.1-P	Field mustard	extracellular	31.07	35.33
Bra012375.1-P	Field mustard	cytosol	29.57	35.2
Bra007332.1-P	Field mustard	extracellular	28.44	34.95
Bra016345.1-P	Field mustard	extracellular	30.7	34.83
Bra004655.1-P	Field mustard	extracellular	27.87	34.58
Bra001279.1-P	Field mustard	extracellular	27.87	33.87
Bra016911.1-P	Field mustard	extracellular	27.5	33.72
Bra008493.1-P	Field mustard	extracellular	23.92	32.56
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	27.31	32.37
Bra001605.1-P	Field mustard	extracellular	26.37	30.97
Bra023600.1-P	Field mustard	extracellular	24.86	30.84
Bra027211.1-P	Field mustard	extracellular	26.18	30.82
Bra027210.1-P	Field mustard	extracellular	26.37	30.7
Bra008572.1-P	Field mustard	extracellular	24.86	30.41
Bra011341.1-P	Field mustard	cytosol	22.41	30.28
Bra040077.1-P	Field mustard	extracellular	16.2	23.56

Protein Annotations

MapMan:50.3.2	EnsemblPlantsGene:Bra018429	EnsemblPlants:Bra018429.1	EnsemblPlants:Bra018429.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
UniProt:M4DPI8	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58	InterPro:PbH1	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002547E76	SEG:seg

Description

AT1G10640 (E=5e-244) | polygalacturonase

Coordinates

chrA05:+:8177208..8179522

Molecular Weight (calculated)

58665.2 Da

IEP (calculated)

7.659

GRAVY (calculated)

-0.291

Length

531 amino acids

Sequence
(BLAST)

001: MIMRKSLRLR SITLMMLMAV LVWSVTLETC IARRGRHWRH NNRRSSDMSD SLSSKKPKSH GNSHHSSHNN NNSHHHKSKP KPKPKLQTPP KVDDNYNSPV
101: VSQLPKVQPP SLPSLNESQV FNVMDFGAKG DGIRDDTKAF EAAWEAACKV EASMMIIPPE YTFLVGPISF SGPYCQPNIV FQLDGTIIAP TDSKSWGKGL
201: MWWIDFTKLV GIKVQGKGVI DGRGSGWWQQ DYPFIDGETK LIVPLNNSVN QNPPISEFDL KMPSIKPTAL RFYGSIGVEV SGITIQNSPQ CHLKFDNCGD
301: VVVHDMTVSS PGDSPNTDGI HLQNTRDVLI HSTTLSCGDD CISIQTGCSN VYIHTVTCGP GHGISIGSLG KDSTKACVSN ITVRDVAMHN TMTGVRIKTW
401: QGGVGSVKGI LFSNIQLNEV QLPIVIDQFY CDHTTCKNQT SAVAVEGVTY ERIKGTYTVK PVHFACSDDF PCVDVQLSAI ELKPVQERYH MYDPFCWQTF
501: GELNTPTLPP IDCLQIGKPA RNIVQSDHDV C

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.