Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37962 | Canola | extracellular, golgi, vacuole | 88.72 | 88.72 |
| CDX93397 | Canola | extracellular, golgi, vacuole | 88.72 | 88.56 |
| Bra019912.1-P | Field mustard | extracellular, golgi, vacuole | 88.72 | 88.56 |
| Bra031724.1-P | Field mustard | extracellular | 84.77 | 87.57 |
| CDY34877 | Canola | extracellular, golgi | 79.89 | 86.91 |
| CDY54228 | Canola | extracellular, golgi, vacuole | 85.53 | 86.17 |
| Bra018429.1-P | Field mustard | extracellular, golgi, vacuole | 85.9 | 86.06 |
| CDY20962 | Canola | extracellular, golgi, vacuole | 85.34 | 85.5 |
| CDY20612 | Canola | extracellular | 85.15 | 85.31 |
| AT1G60590.1 | Thale cress | extracellular | 77.63 | 76.48 |
| VIT_01s0127g00400.t01 | Wine grape | extracellular, mitochondrion, plastid | 67.29 | 69.11 |
| Solyc05g005170.2.1 | Tomato | nucleus | 62.78 | 65.75 |
| PGSC0003DMT400035162 | Potato | extracellular | 62.97 | 65.56 |
| Os05t0578600-01 | Rice | cytosol, extracellular | 38.16 | 65.06 |
| Os01t0637500-00 | Rice | cytosol, extracellular | 40.98 | 64.5 |
| KRG99364 | Soybean | extracellular, nucleus | 64.66 | 63.94 |
| KRH45648 | Soybean | nucleus | 64.29 | 63.57 |
| HORVU3Hr1G031180.1 | Barley | extracellular | 16.73 | 63.12 |
| GSMUA_Achr6P22080_001 | Banana | extracellular | 55.26 | 60.62 |
| GSMUA_Achr5P09080_001 | Banana | extracellular | 55.26 | 60.37 |
| GSMUA_Achr4P02960_001 | Banana | extracellular | 53.57 | 60.0 |
| AT5G14650.1 | Thale cress | extracellular | 47.56 | 58.16 |
| TraesCS3A01G225800.2 | Wheat | extracellular | 57.14 | 56.4 |
| HORVU3Hr1G056270.10 | Barley | extracellular | 56.2 | 56.2 |
| GSMUA_Achr1P27280_001 | Banana | extracellular | 53.57 | 55.88 |
| EES01142 | Sorghum | extracellular | 55.83 | 55.83 |
| TraesCS3D01G223900.1 | Wheat | extracellular | 56.2 | 55.78 |
| TraesCS1A01G418000.1 | Wheat | extracellular | 53.38 | 55.69 |
| TraesCS3B01G258600.2 | Wheat | extracellular | 55.83 | 55.31 |
| Os01t0636500-01 | Rice | extracellular | 55.83 | 55.2 |
| EES20001 | Sorghum | extracellular | 55.64 | 55.12 |
| TraesCS1B01G448100.1 | Wheat | extracellular | 54.89 | 55.09 |
| Zm00001d011444_P002 | Maize | extracellular | 56.02 | 55.08 |
| Zm00001d044110_P001 | Maize | extracellular | 55.83 | 54.8 |
| TraesCS1D01G425600.1 | Wheat | extracellular | 53.57 | 54.08 |
| HORVU1Hr1G091430.5 | Barley | extracellular | 55.08 | 52.89 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 50.75 | 52.33 |
| AT3G26610.1 | Thale cress | extracellular | 38.91 | 44.04 |
| AT1G48100.1 | Thale cress | extracellular | 38.91 | 43.58 |
| AT1G56710.1 | Thale cress | extracellular | 33.83 | 41.47 |
| AT1G02460.1 | Thale cress | extracellular | 37.03 | 40.12 |
| AT4G01890.1 | Thale cress | extracellular | 34.4 | 39.19 |
| AT1G23460.1 | Thale cress | extracellular | 32.14 | 37.17 |
| AT2G41850.1 | Thale cress | extracellular | 29.89 | 36.72 |
| AT1G80170.1 | Thale cress | extracellular | 30.45 | 36.49 |
| AT4G35670.1 | Thale cress | extracellular | 26.5 | 35.79 |
| AT1G70500.1 | Thale cress | extracellular | 31.02 | 35.26 |
| AT1G80140.1 | Thale cress | extracellular | 22.18 | 35.12 |
| AT3G07970.1 | Thale cress | extracellular | 28.95 | 35.08 |
| AT3G57510.1 | Thale cress | extracellular | 28.01 | 34.57 |
| AT5G44830.1 | Thale cress | extracellular | 21.43 | 34.34 |
| AT5G39910.1 | Thale cress | extracellular | 24.06 | 34.32 |
| AT5G44840.1 | Thale cress | extracellular | 25.0 | 34.02 |
| AT5G17200.1 | Thale cress | extracellular | 25.19 | 31.83 |
| AT5G27530.1 | Thale cress | cytosol | 27.07 | 31.44 |
| AT3G15720.1 | Thale cress | extracellular | 25.94 | 30.26 |
| AT4G32370.1 | Thale cress | extracellular | 19.17 | 29.82 |
| AT4G32380.1 | Thale cress | extracellular | 22.93 | 26.93 |
| AT4G32375.1 | Thale cress | extracellular | 17.86 | 22.46 |
Protein Annotations
| MapMan:50.3.2 | EntrezGene:837607 | UniProt:A0A178WFE4 | ProteinID:AEE28612.1 | ArrayExpress:AT1G10640 | EnsemblPlantsGene:AT1G10640 |
| RefSeq:AT1G10640 | TAIR:AT1G10640 | RefSeq:AT1G10640-TAIR-G | EnsemblPlants:AT1G10640.1 | TAIR:AT1G10640.1 | UniProt:F4I5U6 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | RefSeq:NP_563875.6 | ProteinID:OAP16225.1 | PFAM:PF00295 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF58 | InterPro:PbH1 | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 |
| SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI0001A7B1A0 | SEG:seg | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
Coordinates
chr1:-:3515182..3518035
Molecular Weight (calculated)
58351.0 Da
IEP (calculated)
8.691
GRAVY (calculated)
-0.333
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.