Factsheet for AT1G80140.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 3
golgi 3
extracellular 6
mitochondrion 1
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38648	Canola	cytosol	81.55	73.26
CDY37571	Canola	cytosol	81.55	73.26
Bra008493.1-P	Field mustard	extracellular	79.46	68.46
Solyc12g009420.1.1	Tomato	extracellular	44.64	36.85
AT5G44830.1	Thale cress	extracellular	35.42	35.84
AT4G35670.1	Thale cress	extracellular	38.1	32.49
AT5G17200.1	Thale cress	extracellular	38.1	30.4
AT5G44840.1	Thale cress	extracellular	34.82	29.92
AT4G32370.1	Thale cress	extracellular	30.36	29.82
AT5G39910.1	Thale cress	extracellular	32.74	29.49
Zm00001d039668_P001	Maize	plastid	38.1	29.29
AT3G57510.1	Thale cress	extracellular	37.2	29.0
AT3G15720.1	Thale cress	extracellular	38.69	28.51
AT1G56710.1	Thale cress	extracellular	36.61	28.34
AT1G70500.1	Thale cress	extracellular	39.29	28.21
AT1G80170.1	Thale cress	extracellular	36.61	27.7
AT4G01890.1	Thale cress	extracellular	38.39	27.62
AT4G32380.1	Thale cress	extracellular	36.9	27.37
AT3G07970.1	Thale cress	extracellular	35.71	27.33
AT5G14650.1	Thale cress	extracellular	35.12	27.13
AT1G23460.1	Thale cress	extracellular	36.9	26.96
AT5G27530.1	Thale cress	cytosol	36.61	26.86
AT2G41850.1	Thale cress	extracellular	34.23	26.56
AT1G02460.1	Thale cress	extracellular	38.39	26.27
AT3G26610.1	Thale cress	extracellular	36.01	25.74
AT1G48100.1	Thale cress	extracellular	36.31	25.68
AT4G32375.1	Thale cress	extracellular	31.55	25.06
AT1G10640.1	Thale cress	extracellular, golgi	35.12	22.18
AT1G60590.1	Thale cress	extracellular	35.42	22.04
Os01t0172900-00	Rice	nucleus	18.75	21.36

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:844354	ProteinID:AEE36362.1	ArrayExpress:AT1G80140	EnsemblPlantsGene:AT1G80140
RefSeq:AT1G80140	TAIR:AT1G80140	RefSeq:AT1G80140-TAIR-G	EnsemblPlants:AT1G80140.1	TAIR:AT1G80140.1	Unigene:At.52577
UniProt:F4HS31	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	RefSeq:NP_178131.1
PFAM:PF00295	PO:PO:0000084	PO:PO:0009025	PANTHER:PTHR31375	PANTHER:PTHR31375:SF97	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI00000484C0	:

Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HS31]

Coordinates

chr1:+:30146611..30148180

Molecular Weight (calculated)

36047.1 Da

IEP (calculated)

6.333

GRAVY (calculated)

0.000

Length

336 amino acids

Sequence
(BLAST)

001: MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF IIDGEMIAQS DPQKWGNGEN GVIPWLIFDQ VDGLAIVGRG LLDGQGKSWW DIHCRDHPGP MMTFSNCGNV
101: TLKSLRFRNS AQTHVLVMGS QNVYIDDIKI TSPEASPNTD GIHITSSTAV SINHSDIATG DDCVSIGDQV NNLNVTFMNC GPGHGVSIGS LGRGGTEVTV
201: ENIRVSHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS SVQNPIIIDQ FYGCAPTCVE TMKGVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNLF
301: MRDIDLSPAD GIDSVSSLCS FAHGSAQGII RPLSCF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.