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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY37571 Canola cytosol 98.4 98.4
AT1G80140.1 Thale cress extracellular 73.26 81.55
Solyc12g009420.1.1 Tomato extracellular 43.05 39.56
CDY30105 Canola extracellular 40.91 34.08
CDY50769 Canola extracellular 31.02 33.92
CDX97703 Canola extracellular 40.64 33.63
CDY58462 Canola extracellular 40.64 33.55
CDX75843 Canola extracellular 40.64 33.55
CDY56952 Canola extracellular 37.17 33.02
CDX72553 Canola extracellular 35.56 33.0
CDY47032 Canola extracellular 35.56 33.0
CDX74418 Canola extracellular 37.17 32.94
CDY30107 Canola extracellular 40.11 32.89
CDY69377 Canola extracellular 35.03 32.75
CDX97704 Canola extracellular 39.84 32.68
CDX72025 Canola extracellular 37.7 32.64
CDY04708 Canola plastid 24.06 32.49
CDX67693 Canola extracellular 37.43 32.33
CDX85471 Canola extracellular 35.03 32.27
CDY39404 Canola extracellular 34.22 32.08
CDY35976 Canola extracellular 36.1 32.07
CDY28005 Canola extracellular 36.1 32.07
CDX73440 Canola extracellular 34.22 32.0
CDY41695 Canola extracellular 36.63 31.49
CDY16952 Canola extracellular 36.36 31.34
CDY54312 Canola extracellular 37.17 31.31
CDY39399 Canola extracellular 33.42 31.25
Zm00001d039668_P001 Maize plastid 36.36 31.12
CDY02729 Canola extracellular 35.56 31.07
CDY25786 Canola cytosol 36.9 30.94
CDY07963 Canola extracellular 36.1 30.82
CDY54292 Canola cytosol 36.63 30.72
CDX95284 Canola extracellular 33.16 30.69
CDY57689 Canola extracellular 36.63 30.65
CDX79907 Canola extracellular 35.56 30.57
CDY67535 Canola extracellular 25.4 30.55
CDY11585 Canola extracellular 37.97 30.41
CDY47139 Canola extracellular 37.97 30.41
CDX68839 Canola cytosol 32.89 30.3
CDX75239 Canola cytosol 32.89 30.3
CDY14791 Canola extracellular 35.03 30.25
CDY13645 Canola extracellular 37.97 30.21
CDX74019 Canola extracellular 35.29 30.21
CDX69397 Canola extracellular 32.62 30.2
CDX83631 Canola extracellular 37.97 30.15
CDY48768 Canola extracellular 35.03 30.11
CDY06902 Canola extracellular 34.76 30.02
CDX69569 Canola extracellular 34.76 29.61
CDY09873 Canola extracellular 34.76 29.61
CDY71357 Canola extracellular, vacuole 24.33 28.71
CDX93644 Canola extracellular 35.83 28.39
CDY43307 Canola extracellular 35.83 28.33
CDY39884 Canola extracellular 33.42 28.09
CDY15246 Canola extracellular 36.63 27.9
CDX77909 Canola extracellular 36.63 27.9
CDX89966 Canola extracellular 36.36 27.7
CDY44150 Canola extracellular, golgi, plastid 36.63 27.29
CDX93397 Canola extracellular, golgi, vacuole 36.63 25.7
CDY54228 Canola extracellular, golgi, vacuole 36.1 25.57
CDY37962 Canola extracellular, golgi, vacuole 36.36 25.56
CDY50367 Canola extracellular, golgi 36.36 25.37
CDY47212 Canola extracellular 36.36 25.37
CDY61868 Canola extracellular 37.17 25.32
CDY20962 Canola extracellular, golgi, vacuole 35.03 24.67
CDY20612 Canola extracellular 35.03 24.67
CDY41445 Canola endoplasmic reticulum 36.1 24.28
CDY34877 Canola extracellular, golgi 31.28 23.93
Os01t0172900-00 Rice nucleus 18.72 23.73
CDY06100 Canola extracellular 26.47 23.18
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HPE3UniProt:A0A078HPE3EnsemblPlants:CDY38648ProteinID:CDY38648
ProteinID:CDY38648.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0016798GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00066357001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295
PANTHER:PTHR31375PANTHER:PTHR31375:SF97InterPro:PbH1InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710
SUPFAM:SSF51126UniParc:UPI0004EF4068::::
Description
BnaC02g23310DBnaC02g23310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPE3]
Coordinates
chrLK032429:+:2519..4241
Molecular Weight (calculated)
40281.1 Da
IEP (calculated)
7.648
GRAVY (calculated)
-0.133
Length
374 amino acids
Sequence
(BLAST)
001: MKYGAVGDGI SDDTSALQKA WDSACNGSSK IGSVYVPAGK VFLLSSLHFT GPCKLKPLIF TIDGEMKAQS DPNKWQKGEN GIIPWLIFDR VEGLVLSGRG
101: LLDGQGKGWW DIHCRDHPGP NCIWLAPTMM TFSNCRNVIL KSLRFRNSAQ SHILVMGSQN VHIKDVKIKS PEISPNTDGV HITSSSDVSI THSDFATGDD
201: CVSIGDQVHN LSVTFVNCGP GHGVSVGSLG RGGTEVEVED IRVAHVNFTG TTNGARIKTW PGGTGYVRGI EFFDIRFSNV QNPIVIDQFY GCAPNCVQTE
301: KAVHIEKVKY MKMSGTSRTE VAMKLECSGK NACSNVFMRD IDLSPASGIG SVSSLCSFVQ GATQGTIRPS SCIQ
Best Arabidopsis Sequence Match ( AT1G80140.1 )
(BLAST)
001: MGSVNVPAGK VFLLNSLHFT GPCIPKPLLF IIDGEMIAQS DPQKWGNGEN GVIPWLIFDQ VDGLAIVGRG LLDGQGKSWW DIHCRDHPGP MMTFSNCGNV
101: TLKSLRFRNS AQTHVLVMGS QNVYIDDIKI TSPEASPNTD GIHITSSTAV SINHSDIATG DDCVSIGDQV NNLNVTFMNC GPGHGVSIGS LGRGGTEVTV
201: ENIRVSHVNF TGTTNGARIK TWPGGTGYVR GIEFFDIRFS SVQNPIIIDQ FYGCAPTCVE TMKGVHIEKV RYMKMSGTSA TKVAMKLECS GESVPCSNLF
301: MRDIDLSPAD GIDSVSSLCS FAHGSAQGII RPLSCF
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HS31]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.