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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra027926.1-P Field mustard extracellular 98.16 98.16
CDX95284 Canola extracellular 90.34 97.28
AT1G56710.1 Thale cress extracellular 82.3 82.49
CDY67535 Canola extracellular 40.0 55.95
CDX77909 Canola extracellular 57.01 50.51
CDY15246 Canola extracellular 56.78 50.31
CDX89966 Canola extracellular 56.78 50.31
CDX93644 Canola extracellular 52.18 48.09
CDY43307 Canola extracellular 51.95 47.78
CDY71357 Canola extracellular, vacuole 33.1 45.43
CDY54312 Canola extracellular 40.69 39.86
CDY57689 Canola extracellular 40.23 39.15
CDY04708 Canola plastid 24.83 38.99
CDY09873 Canola extracellular 39.31 38.95
CDX69569 Canola extracellular 39.31 38.95
CDX67693 Canola extracellular 38.62 38.8
CDX79907 Canola extracellular 38.62 38.62
CDY48768 Canola extracellular 38.39 38.39
CDY14791 Canola extracellular 37.93 38.11
CDY06902 Canola extracellular 37.93 38.11
CDX72025 Canola extracellular 37.7 37.96
CDY54292 Canola cytosol 38.62 37.67
CDY25786 Canola cytosol 38.16 37.22
CDY37571 Canola cytosol 31.95 37.17
CDY56952 Canola extracellular 35.86 37.05
CDX74418 Canola extracellular 35.86 36.97
CDY13645 Canola extracellular 39.77 36.81
CDX83631 Canola extracellular 39.77 36.73
CDY38648 Canola cytosol 31.49 36.63
CDY11585 Canola extracellular 39.31 36.62
CDY47139 Canola extracellular 39.31 36.62
CDX74019 Canola extracellular 35.17 35.01
CDY47032 Canola extracellular 32.18 34.74
CDY07963 Canola extracellular 34.94 34.7
CDY54228 Canola extracellular, golgi, vacuole 41.84 34.47
CDY20612 Canola extracellular 42.07 34.46
CDY20962 Canola extracellular, golgi, vacuole 42.07 34.46
CDY35976 Canola extracellular 33.33 34.44
CDY47212 Canola extracellular 42.3 34.33
CDY50367 Canola extracellular, golgi 42.3 34.33
CDY69377 Canola extracellular 31.49 34.25
CDY28005 Canola extracellular 33.1 34.2
CDY39404 Canola extracellular 31.26 34.09
CDY44150 Canola extracellular, golgi, plastid 39.31 34.06
CDX72553 Canola extracellular 31.49 33.99
CDX93397 Canola extracellular, golgi, vacuole 41.61 33.96
CDY37962 Canola extracellular, golgi, vacuole 41.38 33.83
CDX85471 Canola extracellular 31.49 33.74
CDY30105 Canola extracellular 34.71 33.63
CDY50769 Canola extracellular 26.44 33.63
CDY02729 Canola extracellular 32.87 33.41
CDX97703 Canola extracellular 34.71 33.41
CDY34877 Canola extracellular, golgi 37.24 33.13
CDY58462 Canola extracellular 34.48 33.11
CDX73440 Canola extracellular 30.34 33.0
CDY30107 Canola extracellular 34.48 32.89
CDX97704 Canola extracellular 34.48 32.89
CDX75843 Canola extracellular 34.25 32.89
CDY39399 Canola extracellular 30.11 32.75
CDY16952 Canola extracellular 31.49 31.57
CDX68839 Canola cytosol 29.2 31.28
CDX69397 Canola extracellular 28.97 31.19
CDX75239 Canola cytosol 28.97 31.03
CDY41445 Canola endoplasmic reticulum 39.08 30.58
CDY61868 Canola extracellular 37.47 29.69
CDY39884 Canola extracellular 27.82 27.19
CDY06100 Canola extracellular 25.29 25.76
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HT32UniProt:A0A078HT32EnsemblPlants:CDY41695ProteinID:CDY41695
ProteinID:CDY41695.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0016798GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00073399001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295
ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF13InterPro:PbH1InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0004EF31F0SEG:seg:
Description
BnaA09g15230DBnaA09g15230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT32]
Coordinates
chrLK032504:+:9619..11782
Molecular Weight (calculated)
47713.7 Da
IEP (calculated)
7.306
GRAVY (calculated)
-0.059
Length
435 amino acids
Sequence
(BLAST)
001: MSFASKLLYA FFFILLSSSR VTHNINISPS PAPNPAYYDD NNNALTVFDV TSFGAIGDCR TDDTSAFKMA WDTACMTTGV DSAVLLVPYT FCFLVKPTSF
101: NGPCRTRLTL QIDGIIVSPD GPKSWPWNFK RQWLMFYRVN GLSIQGSGLV NGRGQKWWDL PCKPHKGVNG TTQPGPCDSP VAIRIFQSSD VKIKGLTFKN
201: SAQFHVRFDN CDDVVVDSVT INAPASSPNT DGIHIENTHN VQIRNSVISN GDDCVSIGAG CFNVDIKNIT CGPSHGISIG SLGVHNSSAW VSNITVTNST
301: IWNSDNGVRI KTWQGGSGLV SRIVFRNILM VNVRNPIMID QYYCQTKNCA NQTSAVIISD VLYANIKGSY DLRSPPMHFG CSDSFPCTNL RLEDVDLFPY
401: KGQLFENPFC WNAYGSMQTV TVPPVNCLIE ALPGC
Best Arabidopsis Sequence Match ( AT1G56710.1 )
(BLAST)
001: MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF
101: NGPCRTNLVL QIDGFIVSPD GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP VAIRLFQSSK VRIQGINFMN
201: SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST
301: IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS
401: KGQHLENPFC WNAYGSMKIT VPPVYCLLDA PPDF
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FXC1]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.