Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008572.1-P Field mustard extracellular 93.56 87.1
CDY16952 Canola extracellular 87.62 81.57
CDX85471 Canola extracellular 68.81 68.47
CDY02729 Canola extracellular 71.53 67.52
AT5G17200.1 Thale cress extracellular 65.1 62.47
PGSC0003DMT400056828 Potato extracellular 39.11 39.7
CDY50769 Canola extracellular 33.42 39.47
CDY39404 Canola extracellular 38.12 38.6
PGSC0003DMT400008955 Potato extracellular 32.67 37.93
CDX73440 Canola extracellular 37.13 37.5
CDY69377 Canola extracellular 37.13 37.5
CDX72553 Canola extracellular 37.13 37.22
CDY39399 Canola extracellular 36.63 37.0
CDY47032 Canola extracellular 36.88 36.97
CDX72025 Canola extracellular 37.62 35.19
CDX67693 Canola extracellular 37.13 34.64
GSMUA_Achr9P22320_001 Banana extracellular 35.4 34.62
CDX79907 Canola extracellular 37.13 34.48
CDX75239 Canola cytosol 34.65 34.48
CDX75843 Canola extracellular 38.61 34.44
CDY30105 Canola extracellular 38.12 34.3
CDX68839 Canola cytosol 34.41 34.24
TraesCS2B01G423300.1 Wheat extracellular 33.91 34.16
TraesCS2D01G402100.1 Wheat extracellular 34.16 34.07
CDY48768 Canola extracellular 36.63 34.02
TraesCS2D01G402200.1 Wheat extracellular 32.92 34.02
CDY58462 Canola extracellular 38.12 34.0
CDX97704 Canola extracellular 38.37 33.99
CDY30107 Canola extracellular 38.37 33.99
CDY14791 Canola extracellular 36.39 33.95
GSMUA_Achr4P13200_001 Banana extracellular 35.4 33.89
CDX97703 Canola extracellular 37.87 33.85
CDY06902 Canola extracellular 36.14 33.72
TraesCS2A01G405300.1 Wheat extracellular, nucleus 33.66 33.58
CDY37571 Canola cytosol 30.94 33.42
KXG26899 Sorghum extracellular 34.65 33.33
TraesCS2D01G402300.1 Wheat extracellular 27.48 33.33
TraesCS2B01G423400.1 Wheat plastid 28.96 33.33
TraesCS2A01G405100.1 Wheat extracellular 34.41 33.33
CDY56952 Canola extracellular 34.41 33.02
TraesCS2A01G405600.1 Wheat extracellular 25.99 32.92
CDX74418 Canola extracellular 34.16 32.7
CDY38648 Canola cytosol 30.2 32.62
GSMUA_Achr11P... Banana extracellular 33.42 32.45
HORVU2Hr1G096130.1 Barley extracellular 32.43 32.35
CDX74019 Canola extracellular 34.9 32.27
CDY04708 Canola plastid 22.03 32.13
CDY35976 Canola extracellular 33.42 32.07
CDY28005 Canola extracellular 33.42 32.07
CDY07963 Canola extracellular 34.65 31.96
TraesCS2D01G402000.1 Wheat extracellular 33.42 31.54
TraesCS2B01G423200.1 Wheat extracellular 33.17 31.53
CDY39884 Canola extracellular 34.65 31.46
CDX95284 Canola extracellular 30.2 30.2
CDY67535 Canola extracellular 22.77 29.58
CDY41695 Canola extracellular 31.19 28.97
CDY57689 Canola extracellular 31.44 28.41
CDY54312 Canola extracellular 31.19 28.38
Zm00001d039668_P001 Maize plastid 30.2 27.92
CDX69569 Canola extracellular 29.95 27.56
CDY09873 Canola extracellular 29.7 27.33
CDY47139 Canola extracellular 30.69 26.55
CDY11585 Canola extracellular 30.45 26.34
CDY25786 Canola cytosol 28.96 26.23
CDY54292 Canola cytosol 28.96 26.23
CDY61868 Canola extracellular 35.4 26.05
CDX77909 Canola extracellular 30.69 25.25
CDX89966 Canola extracellular 30.45 25.05
CDY06100 Canola extracellular 26.24 24.82
CDY44150 Canola extracellular, golgi, plastid 30.69 24.7
CDY15246 Canola extracellular 29.95 24.64
CDX93644 Canola extracellular 28.71 24.58
CDX83631 Canola extracellular 28.47 24.42
CDY43307 Canola extracellular 28.47 24.31
CDY71357 Canola extracellular, vacuole 19.06 24.29
CDY13645 Canola extracellular 27.97 24.04
CDY20962 Canola extracellular, golgi, vacuole 28.96 22.03
CDY54228 Canola extracellular, golgi, vacuole 28.71 21.97
CDY20612 Canola extracellular 28.71 21.85
Os01t0172900-00 Rice nucleus 15.84 21.69
CDY37962 Canola extracellular, golgi, vacuole 28.47 21.62
CDY41445 Canola endoplasmic reticulum 29.7 21.58
CDX93397 Canola extracellular, golgi, vacuole 28.22 21.39
CDY34877 Canola extracellular, golgi 25.74 21.27
CDY47212 Canola extracellular 27.48 20.71
CDY50367 Canola extracellular, golgi 27.23 20.52
GSMUA_Achr4P06370_001 Banana extracellular 34.9 18.7
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078BYI0EnsemblPlants:CDX69397ProteinID:CDX69397ProteinID:CDX69397.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00135363001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF42InterPro:PbH1
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0004EED5D2
Description
BnaA10g17460D
Coordinates
chrLK031790:+:50476..52586
Molecular Weight (calculated)
44070.5 Da
IEP (calculated)
8.476
GRAVY (calculated)
-0.188
Length
404 amino acids
Sequence
(BLAST)
001: MFFVLLCLFQ ISKLDFCLAG SVHMVNNNGH ERHRFISVTD FGAVCDGKTD DTQAFLKAWE AVCNGFSNKS FLVPLGKTCM LKPLTFAGPC TSSSITFVIR
101: GNIVAPVRSP KILSWYLSPD PKYSKLLINI NPSDRAMHFN NCNGLRMYNL QHLNSPRNHI GLTGSKNISI SGLNLTAPGD SPNTDGIDIS RCIGVDIRDS
201: VISTGDDCIA INSGSSYINI TGLFCGPGHG ISVGSLGRNG EFASVEEVRV KNCTLSNTMN GVRIKTYQNG LGYARKISFE DIRMVDSKNP IIIEQNYLNR
301: GKIEEVSFEN SNYQNRGGKN RFYKTESGNG RGVKVSDVRY SRIYGSSASD DAVTFNCNAD LGCEDIVMDH VDIVSAKAGH AVSASCKNVR GSYFSSPVSC
401: IKKH
Best Arabidopsis Sequence Match ( AT5G17200.1 )
(BLAST)
001: MKSSLFFVLL CLFQINKLCF CLEEESLKVK NGFGSNGFIS VTSFGAIGDG KTDDTKAFLK AWEAVCKGGH NRKILVPQGK TFMLKPLTFI GPCKSSTISL
101: SIRGNLVAPG YTWYAGRYTT WISFDSINGL VVTGGGTIDG RGSLWWGNVN NRPCAMHFNN CNGLRISNLR HLNSPRNHVG LSCSQNIEVR GLRMTAPGDS
201: PNTDGIDISN CIGVHIHDSV IATGDDCIAI NSGSSHINIT GIFCGPGHGI SVGSLGVTGD FETVEEVRVK NCTFTKTQNG VRIKTYQNGS GYARKISFED
301: INMVASENPI IIDQTYHNGG TNGGISKSSS SYQNCHLTAK QRTPSGNGKG VKVTDVRYAR IRGSSASDQD ITLNCDADLG CSDIVMDNVN MVSATFGHKL
401: FSSCKNAHGS LFASKVDCLK H
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FFI9]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.