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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra012375.1-P Field mustard cytosol 98.65 98.65
CDY54292 Canola cytosol 98.43 98.43
CDY04708 Canola plastid 57.62 92.78
AT1G23460.1 Thale cress extracellular 87.22 84.57
CDY44150 Canola extracellular, golgi, plastid 90.13 80.08
CDY47139 Canola extracellular 77.8 74.3
CDY11585 Canola extracellular 77.8 74.3
CDY41445 Canola endoplasmic reticulum 92.6 74.28
Solyc09g098270.2.1 Tomato cytosol 66.37 68.36
Solyc04g025440.2.1 Tomato extracellular 67.04 65.0
PGSC0003DMT400055713 Potato extracellular 66.37 64.63
PGSC0003DMT400080722 Potato extracellular 66.59 64.57
GSMUA_Achr7P01870_001 Banana cytosol 58.52 59.32
GSMUA_Achr4P22100_001 Banana extracellular 57.17 54.96
EES04449 Sorghum extracellular 54.04 46.35
Zm00001d015129_P001 Maize mitochondrion 52.02 44.96
Os02t0130200-01 Rice extracellular, golgi 50.0 43.9
TraesCS6B01G118000.2 Wheat extracellular, golgi, vacuole 51.35 43.37
TraesCS6A01G084500.1 Wheat extracellular, golgi, vacuole 50.67 43.05
TraesCSU01G113500.1 Wheat extracellular, golgi, vacuole 50.67 42.8
HORVU6Hr1G015390.2 Barley extracellular, golgi 50.67 42.8
CDY57689 Canola extracellular 40.36 40.27
CDY54312 Canola extracellular 39.91 40.09
CDY14791 Canola extracellular 38.12 39.26
CDY48768 Canola extracellular 38.12 39.08
CDY06902 Canola extracellular 37.67 38.8
CDX72025 Canola extracellular 37.44 38.66
CDX74019 Canola extracellular 37.67 38.44
CDY07963 Canola extracellular 37.67 38.36
CDX67693 Canola extracellular 37.22 38.34
CDY41695 Canola extracellular 37.22 38.16
CDX69569 Canola extracellular 37.44 38.04
CDY09873 Canola extracellular 37.44 38.04
CDX79907 Canola extracellular 37.0 37.93
CDX95284 Canola extracellular 34.3 37.87
CDY67535 Canola extracellular 26.23 37.62
CDY28005 Canola extracellular 35.43 37.53
CDY35976 Canola extracellular 35.43 37.53
CDY37571 Canola cytosol 30.94 36.9
CDY38648 Canola cytosol 30.94 36.9
CDY15246 Canola extracellular 38.56 35.03
CDX72553 Canola extracellular 31.61 34.99
CDY47032 Canola extracellular 31.61 34.99
CDY56952 Canola extracellular 32.96 34.92
CDX89966 Canola extracellular 38.34 34.83
CDY69377 Canola extracellular 31.17 34.75
CDX74418 Canola extracellular 32.74 34.6
CDY39404 Canola extracellular 30.94 34.59
CDY50769 Canola extracellular 26.46 34.5
CDX77909 Canola extracellular 37.67 34.22
CDY39399 Canola extracellular 30.49 34.0
KRG99363 Soybean extracellular 67.04 33.94
CDX73440 Canola extracellular 30.04 33.5
CDX93644 Canola extracellular 35.2 33.26
CDY43307 Canola extracellular 35.2 33.19
CDY58462 Canola extracellular 33.18 32.67
CDX75843 Canola extracellular 33.18 32.67
CDY13645 Canola extracellular 33.63 31.91
CDY71357 Canola extracellular, vacuole 22.65 31.86
CDX83631 Canola extracellular 33.63 31.85
CDX85471 Canola extracellular 28.7 31.53
CDX97703 Canola extracellular 31.84 31.42
CDY30105 Canola extracellular 31.61 31.4
CDX75239 Canola cytosol 28.25 31.03
CDX68839 Canola cytosol 28.25 31.03
CDX97704 Canola extracellular 31.61 30.92
CDY02729 Canola extracellular 29.37 30.61
CDY30107 Canola extracellular 31.17 30.48
CDY16952 Canola extracellular 29.6 30.41
CDX93397 Canola extracellular, golgi, vacuole 36.32 30.39
CDY54228 Canola extracellular, golgi, vacuole 35.87 30.3
CDY37962 Canola extracellular, golgi, vacuole 36.1 30.26
CDY50367 Canola extracellular, golgi 35.87 29.85
CDY47212 Canola extracellular 35.87 29.85
CDY20962 Canola extracellular, golgi, vacuole 35.43 29.76
CDY20612 Canola extracellular 35.43 29.76
CDY34877 Canola extracellular, golgi 32.06 29.24
CDX69397 Canola extracellular 26.23 28.96
CDY61868 Canola extracellular 35.43 28.78
CDY06100 Canola extracellular 25.56 26.7
CDY39884 Canola extracellular 26.46 26.52
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078GK66UniProt:A0A078GK66EnsemblPlants:CDY25786ProteinID:CDY25786
ProteinID:CDY25786.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00033189001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF29InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SUPFAM:SSF51126UniParc:UPI0004EECC02SEG:seg:::
Description
BnaA07g09960DBnaA07g09960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK66]
Coordinates
chrLK032180:+:308277..310365
Molecular Weight (calculated)
48238.8 Da
IEP (calculated)
6.052
GRAVY (calculated)
-0.306
Length
446 amino acids
Sequence
(BLAST)
001: MVYTDLDILK KLENFDIPED DDADDHYDTK LFDLASFTSR GSGKNLVNVD TFGAAGDGVS DDTQAFVSAW KQACGTPKSV LLVPQGRTYL VNATKFNGPC
101: ERKLIIQIDG TIMAPEEPNN WDPKFQRIWL EFSKLKGVVF QGNGVIDGSG SKWWAASCKK NKSNPCKSAP TAFTIESSSG VKVRGLTIQN SQQMNFIIAR
201: STSVRVYKVM VSSPGDSPNT DGIHITGSTN VVLQDCKIGT GDDCVSIVNA SSNIKMKRIY CGPGHGISIG SLGNHNSTGI VTKVVLDTAF LKETTNGLRI
301: KTYQGGSGYV KGVRFSNVVM QDVSNPILID QFYCDNPTSC QNQTSAVKIS QIMYRNITGT TKSEKAIKFA CSDAVPCSHI VLNNVNLEGK DGQVEAYCNS
401: AEGFGYGVIH PSADCLYSHD DKGLDQSDKS GHVLVTEEAE TGHDEL
Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.