Factsheet for Os02t0130200-01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 1
vacuole 3
mitochondrion 2
extracellular 3
plasma membrane 3
endoplasmic reticulum 2
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015129_P001	Maize	mitochondrion	69.49	68.41
EES04449	Sorghum	extracellular	69.69	68.08
HORVU6Hr1G015390.2	Barley	extracellular, golgi	65.35	62.88
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	64.17	61.74
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	63.78	61.71
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	63.98	61.55
GSMUA_Achr7P01870_001	Banana	cytosol	45.67	52.73
GSMUA_Achr4P22100_001	Banana	extracellular	46.65	51.08
Bra024602.1-P	Field mustard	cytosol	44.09	50.68
CDY54292	Canola	cytosol	44.29	50.45
AT1G23460.1	Thale cress	extracellular	45.67	50.43
Bra012375.1-P	Field mustard	cytosol	44.09	50.22
CDY25786	Canola	cytosol	43.9	50.0
CDY11585	Canola	extracellular	45.67	49.68
CDY47139	Canola	extracellular	45.47	49.46
Bra016213.1-P	Field mustard	extracellular	45.47	49.46
CDY04708	Canola	plastid	26.97	49.46
Solyc09g098270.2.1	Tomato	cytosol	42.13	49.42
AT1G70500.1	Thale cress	extracellular	45.47	49.36
Bra016345.1-P	Field mustard	extracellular	44.69	48.5
PGSC0003DMT400080722	Potato	extracellular	43.7	48.26
Solyc04g025440.2.1	Tomato	extracellular	43.7	48.26
PGSC0003DMT400055713	Potato	extracellular	42.91	47.6
CDY44150	Canola	extracellular, golgi, plastid	45.28	45.82
Os05t0542800-02	Rice	extracellular	34.65	41.31
CDY41445	Canola	endoplasmic reticulum	44.69	40.83
Os01t0549000-00	Rice	extracellular	22.24	39.79
Os01t0296200-00	Rice	extracellular	20.67	39.47
Os01t0637500-00	Rice	cytosol, extracellular	25.2	37.87
Os05t0279900-00	Rice	cytosol	23.43	37.78
Os05t0578600-01	Rice	cytosol, extracellular	22.64	36.86
Os03t0216800-01	Rice	extracellular	31.5	36.53
Os05t0542900-01	Rice	extracellular	30.71	35.06
Os03t0808000-00	Rice	extracellular	31.69	34.85
Os01t0636500-01	Rice	extracellular	32.48	30.67
Os01t0172900-00	Rice	nucleus	16.34	28.14
KRG99363	Soybean	extracellular	46.46	26.79
Os01t0329300-01	Rice	plastid	33.27	22.27

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4328189	MapMan:50.3.2	EMBL:AK106802	ProteinID:BAF07697.1	ProteinID:BAS76804.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os02g0130200	EnsemblPlants:Os02t0130200-01	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
UniProt:Q0E491	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0000DF051F
RefSeq:XP_015627612.1	SEG:seg	:	:	:	:

Description

Pectin lyase fold/virulence factor domain containing protein. (Os02t0130200-01)

Coordinates

chr2:-:1570152..1574900

Molecular Weight (calculated)

54373.6 Da

IEP (calculated)

4.874

GRAVY (calculated)

-0.365

Length

508 amino acids

Sequence
(BLAST)

001: MEAVGGRRRR PRTMLFLVLV ALMVIMAMAK TASGGGGDDG GAGGDHDHDH EQFLKLWNGR GGADAKEDYL NWDDDDDDDE DEDEEEEEAE QVMAWAAKCR
101: PPAGRNVVNV DSFGAAGDGC SDDTEAFLNA WKKACSLNNA VFLVPGGRRY KVGAARFIGP CKNRMIIQIQ GTIVAPDEPS EWDPASPRLW LLFSGLAGAR
201: IQGGGLIDGS GSKWWANSCK IDRSKPCKGA PTALTIDSCR GVSVRNLRLQ NAQQMHLTVS RSRDVRLASV RVDSPEDSPN TDGIHVADST AVTIQSCRIA
301: TGDDCISISN GSFAVRMRDI DCGPGHGISI GSLGQGGAFA AVDGVSLDGA RVARAQNGVR IKTWQGGAGY VRNVRFAGVR VDGVDHPIVI DQFYCDATRP
401: CRNRTSNVRV SGVVFRNITG TARRAEAIRL ACSDAVPCVG IVLSDIDLRR EDGGGEVQTV CNCAMGFDDG RVSPAADCLR TSPCGGMSPD DYHPDDKDDD
501: DEVRHTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.