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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 1
  • mitochondrion 1
  • plastid 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, plastid
Any Predictor:extracellular, golgi, nucleus, plastid
BaCelLo:nucleus
MultiLoc:extracellular
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024602.1-P Field mustard cytosol 87.65 99.55
CDY04708 Canola plastid 54.38 98.56
CDY54292 Canola cytosol 80.08 90.13
CDY25786 Canola cytosol 80.08 90.13
AT1G23460.1 Thale cress extracellular 80.88 88.26
CDY41445 Canola endoplasmic reticulum 87.45 78.96
CDY11585 Canola extracellular 69.92 75.16
CDY47139 Canola extracellular 69.32 74.52
Solyc09g098270.2.1 Tomato cytosol 58.57 67.9
Solyc04g025440.2.1 Tomato extracellular 60.96 66.52
PGSC0003DMT400080722 Potato extracellular 60.56 66.09
PGSC0003DMT400055713 Potato extracellular 59.76 65.5
GSMUA_Achr7P01870_001 Banana cytosol 51.99 59.32
GSMUA_Achr4P22100_001 Banana extracellular 52.39 56.68
EES04449 Sorghum extracellular 49.2 47.5
Zm00001d015129_P001 Maize mitochondrion 47.41 46.12
Os02t0130200-01 Rice extracellular, golgi 45.82 45.28
HORVU6Hr1G015390.2 Barley extracellular, golgi 47.21 44.89
TraesCS6B01G118000.2 Wheat extracellular, golgi, vacuole 47.01 44.7
TraesCS6A01G084500.1 Wheat extracellular, golgi, vacuole 46.61 44.57
TraesCSU01G113500.1 Wheat extracellular, golgi, vacuole 46.81 44.51
CDY48768 Canola extracellular 36.26 41.84
CDY14791 Canola extracellular 35.66 41.34
CDY57689 Canola extracellular 36.65 41.16
CDY06902 Canola extracellular 35.26 40.88
CDY54312 Canola extracellular 36.06 40.77
CDX79907 Canola extracellular 35.26 40.69
CDX67693 Canola extracellular 34.66 40.18
CDX72025 Canola extracellular 34.46 40.05
CDY41695 Canola extracellular 34.06 39.31
CDX95284 Canola extracellular 31.47 39.11
CDY35976 Canola extracellular 32.67 38.95
CDY28005 Canola extracellular 32.67 38.95
CDX74019 Canola extracellular 33.86 38.9
CDY07963 Canola extracellular 33.86 38.81
CDX69569 Canola extracellular 33.67 38.5
CDY09873 Canola extracellular 33.47 38.27
CDY47032 Canola extracellular 29.88 37.22
CDX72553 Canola extracellular 29.48 36.72
CDY67535 Canola extracellular 22.71 36.66
CDY37571 Canola cytosol 27.29 36.63
CDY38648 Canola cytosol 27.29 36.63
CDY56952 Canola extracellular 30.48 36.34
CDX74418 Canola extracellular 30.48 36.26
KRG99363 Soybean extracellular 63.15 35.98
CDY69377 Canola extracellular 28.49 35.75
CDY39404 Canola extracellular 28.29 35.59
CDY50769 Canola extracellular 24.1 35.38
CDY15246 Canola extracellular 34.46 35.23
CDX93644 Canola extracellular 33.07 35.17
CDY43307 Canola extracellular 33.07 35.1
CDX89966 Canola extracellular 34.26 35.03
CDX77909 Canola extracellular 34.26 35.03
CDX75843 Canola extracellular 31.27 34.66
CDY58462 Canola extracellular 31.27 34.66
CDY39399 Canola extracellular 27.29 34.25
CDX73440 Canola extracellular 27.29 34.25
CDY30105 Canola extracellular 30.28 33.85
CDX97703 Canola extracellular 30.48 33.85
CDY13645 Canola extracellular 31.67 33.83
CDX97704 Canola extracellular 30.68 33.77
CDX83631 Canola extracellular 31.67 33.76
CDX85471 Canola extracellular 27.29 33.74
CDY71357 Canola extracellular, vacuole 21.12 33.44
CDY30107 Canola extracellular 30.28 33.33
CDY16952 Canola extracellular 28.29 32.72
CDY02729 Canola extracellular 27.89 32.71
CDX75239 Canola cytosol 25.9 32.02
CDX68839 Canola cytosol 25.9 32.02
CDX69397 Canola extracellular 24.7 30.69
CDY37962 Canola extracellular, golgi, vacuole 32.27 30.45
CDX93397 Canola extracellular, golgi, vacuole 32.27 30.39
CDY54228 Canola extracellular, golgi, vacuole 31.87 30.3
CDY61868 Canola extracellular 33.07 30.24
CDY47212 Canola extracellular 32.27 30.22
CDY50367 Canola extracellular, golgi 32.27 30.22
CDY20612 Canola extracellular 31.87 30.13
CDY20962 Canola extracellular, golgi, vacuole 31.87 30.13
CDY34877 Canola extracellular, golgi 28.49 29.24
CDY06100 Canola extracellular 24.1 28.34
CDY39884 Canola extracellular 24.7 27.87
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HZV2UniProt:A0A078HZV2EnsemblPlants:CDY44150ProteinID:CDY44150
ProteinID:CDY44150.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016798
EnsemblPlantsGene:GSBRNA2T00079611001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375
PANTHER:PTHR31375:SF29InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126TMHMM:TMhelixUniParc:UPI0004EF17AD
SEG:seg:::::
Description
BnaA09g31020DBnaA09g31020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZV2]
Coordinates
chrLK032580:+:187836..190404
Molecular Weight (calculated)
54014.9 Da
IEP (calculated)
5.324
GRAVY (calculated)
-0.240
Length
502 amino acids
Sequence
(BLAST)
001: MGPTCIKNKL TTKVLCCRGF GVKQRSGKED DLCFKQKMDK LFLLSLIGLL VVTAYGAAKK MVYTDLDILE KLENFDIPED DAGDDYDSKV FDLPSFSSGK
101: NLVSVDTFGA AGDGVSDDTQ AFVSAWNKAC GTPKSVLLVP QGRSYLINAT KFNGPCEQKL VIQIDGTIVA PDEPSNWDPK LQRTWLEFSK LEGVVFQGNG
201: VIDGSGSKWW AASCKKNKSN PCKSAPTALT IDSSSGVKVS GLTIQNSQQM NFIIARSDSV RVSKVMVSSP GDSPNTDGIH ITGSTNVVLQ DCKIGTGDDC
301: VSIVNGSSNI KMKRIYCGPG HGISIGSLGN NNSTGIVTKV VLDTALLRET TNGLRIKTYQ GGSGYVQDVR FTNVEMQDVS NPILIDQFYC DNPTSCQNQT
401: SAVKISQVMY RNITGTTKSE KAIKFACSDT VPCSHIVLNN VNLEGKDGQV EAYCNSAEGF GYGVIHPSAD CLYSHDDKGF DQSHTSGPVL VTEEAEIGHD
501: EL
Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.