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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75239 Canola cytosol 98.28 98.28
AT4G32370.1 Thale cress extracellular 55.91 66.37
CDY39884 Canola extracellular 56.4 51.46
CDY50769 Canola extracellular 34.48 40.94
CDY47032 Canola extracellular 40.39 40.69
CDX72553 Canola extracellular 40.15 40.45
CDY39404 Canola extracellular 37.93 38.6
PGSC0003DMT400056828 Potato extracellular 37.68 38.44
CDY39399 Canola extracellular 37.44 38.0
CDY69377 Canola extracellular 37.19 37.75
CDX85471 Canola extracellular 37.68 37.68
PGSC0003DMT400008955 Potato extracellular 32.27 37.64
CDX73440 Canola extracellular 36.7 37.25
TraesCS2B01G423400.1 Wheat plastid 31.53 36.47
CDY02729 Canola extracellular 37.44 35.51
CDX69397 Canola extracellular 34.24 34.41
CDY16952 Canola extracellular 36.45 34.1
TraesCS2D01G402200.1 Wheat extracellular 32.51 33.76
GSMUA_Achr11P... Banana extracellular 33.74 32.93
CDY37571 Canola cytosol 30.3 32.89
CDY38648 Canola cytosol 30.3 32.89
CDY30105 Canola extracellular 35.96 32.52
CDY30107 Canola extracellular 36.45 32.46
TraesCS2A01G405300.1 Wheat extracellular, nucleus 32.27 32.35
HORVU2Hr1G096130.1 Barley extracellular 32.27 32.35
TraesCS2A01G405600.1 Wheat extracellular 25.37 32.29
CDX97704 Canola extracellular 36.21 32.24
GSMUA_Achr4P13200_001 Banana extracellular 33.5 32.23
TraesCS2B01G423300.1 Wheat extracellular 31.77 32.17
TraesCS2D01G402100.1 Wheat extracellular 32.02 32.1
TraesCS2A01G405100.1 Wheat extracellular 32.76 31.89
CDY28005 Canola extracellular 33.0 31.83
CDX74019 Canola extracellular 34.24 31.81
CDY04708 Canola plastid 21.67 31.77
CDX79907 Canola extracellular 33.99 31.72
CDX97703 Canola extracellular 35.22 31.64
CDY35976 Canola extracellular 32.76 31.59
CDX75843 Canola extracellular 35.22 31.57
TraesCS2B01G423200.1 Wheat extracellular 33.0 31.53
CDY07963 Canola extracellular 33.74 31.28
TraesCS2D01G402300.1 Wheat extracellular 25.62 31.23
CDY56952 Canola extracellular 32.27 31.12
CDX74418 Canola extracellular 32.27 31.04
CDY48768 Canola extracellular 33.25 31.03
CDY58462 Canola extracellular 34.48 30.91
CDY67535 Canola extracellular 23.65 30.87
CDX72025 Canola extracellular 32.76 30.79
CDY14791 Canola extracellular 32.76 30.72
TraesCS2D01G402000.1 Wheat extracellular 32.27 30.61
CDY06902 Canola extracellular 32.27 30.25
KXG26899 Sorghum extracellular 31.28 30.24
CDY54312 Canola extracellular 33.0 30.18
GSMUA_Achr9P22320_001 Banana extracellular 30.54 30.02
CDX67693 Canola extracellular 31.53 29.56
CDY57689 Canola extracellular 32.51 29.53
CDY41695 Canola extracellular 31.28 29.2
CDY09873 Canola extracellular 31.28 28.93
CDX69569 Canola extracellular 31.03 28.7
Zm00001d039668_P001 Maize plastid 30.54 28.38
CDY54292 Canola cytosol 31.03 28.25
CDY25786 Canola cytosol 31.03 28.25
CDX95284 Canola extracellular 28.08 28.22
CDY47139 Canola extracellular 31.53 27.41
CDY11585 Canola extracellular 31.53 27.41
CDX93644 Canola extracellular 30.54 26.27
CDY43307 Canola extracellular 30.54 26.22
CDX83631 Canola extracellular 30.3 26.11
CDX77909 Canola extracellular 31.53 26.07
CDY13645 Canola extracellular 30.05 25.96
CDY44150 Canola extracellular, golgi, plastid 32.02 25.9
CDX89966 Canola extracellular 31.03 25.66
CDY15246 Canola extracellular 30.79 25.46
Os01t0172900-00 Rice nucleus 17.0 23.39
CDY41445 Canola endoplasmic reticulum 31.28 22.84
CDY47212 Canola extracellular 30.05 22.76
CDY50367 Canola extracellular, golgi 30.05 22.76
CDY54228 Canola extracellular, golgi, vacuole 29.56 22.73
CDY71357 Canola extracellular, vacuole 17.73 22.71
CDY20612 Canola extracellular 29.56 22.6
CDY20962 Canola extracellular, golgi, vacuole 29.56 22.6
CDY61868 Canola extracellular 30.54 22.59
CDY37962 Canola extracellular, golgi, vacuole 29.31 22.37
CDX93397 Canola extracellular, golgi, vacuole 29.06 22.14
CDY34877 Canola extracellular, golgi 26.35 21.88
CDY06100 Canola extracellular 22.17 21.08
GSMUA_Achr4P06370_001 Banana extracellular 33.99 18.3
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078BY54EnsemblPlants:CDX68839ProteinID:CDX68839ProteinID:CDX68839.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00130563001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF42InterPro:PbH1
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126UniParc:UPI0004EF3BAASEG:seg
Description
BnaC01g06140D
Coordinates
chrLK031789:+:1522948..1525227
Molecular Weight (calculated)
44710.4 Da
IEP (calculated)
8.529
GRAVY (calculated)
-0.303
Length
406 amino acids
Sequence
(BLAST)
001: MIIIVSCHLE YGDGRRILRI KDFITDTNHK NVDYSQVFQK AWKGLCEGEG EGTGGSSLVI NENEKYTIQP QLFEGPCVSS YIHIQIDGKI EAPKRPKQWG
101: NKRTESWLMF KNVESLFING SGVLDPHGET WWRSVRHSKR PRTLSFKQCT DIIYNGLTQY NSPKNHISVY GCTNATLSNL TLLAPEKSPN TDGIGISLSH
201: NIRILDSSIQ TGDDCIAITG ERGGSSDINI TRVACGPGHG ISIGSLGKGD IDDTVENVIV RSCSFWGTQN GARIKTWHGG KGLAKNILFE NITVTNTKYP
301: IIIDQHYSNG GTGHVKGNAV KVSDVTFRYI EGTSASKIAI KLDCDENQGC HNIVMEHIKL TSAKPGKKLS AYCKFADVKA SFVNIHINCG LYPQLLPLFP
401: SLPKII
Best Arabidopsis Sequence Match ( AT4G32380.1 )
(BLAST)
001: MGFEILLSVL LIASYHLQYG NGRMILTMKD FISNSNSTNV DHSQAFQNAW RALCGGKGGS ASFVIQAHET YTIQPQLLEG PCMPRNIHIQ IDGTIEAPKM
101: ANDWGRNKLD CWLCFEKVTG LVLTGSGVLN THGESWWSSV ALQSRPVAVR FFGCQNILYN GLTQINSPRN HITILDSNNA TLSNLHLIAP ASSPNTDGID
201: ISHSQNINIM SSTIKTGDDC VAIKRNSYNI NVTYVTCGPG HGISIGSLGE GGASEVVQNV NVRHCTFTGT QNGARIKTWP GGQGFVKNIL YEDITLINAN
301: FPIIIDQQYR DNAGQYKQSA GATAVKVSDV TFRSFTGTCA APIAIKLDCD PNTGCDNIVM EQINIASSSP KTPLTSYCKF AHVVSRFVSI PITCSFHTED
401: SQPASLNPQP SAPYAISPTT PHTQPHAPTT QPPLFFRFYT NFKAFLGRLG RNC
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G32380]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.