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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 5
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 6
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra016345.1-P Field mustard extracellular 83.45 99.15
CDY04708 Canola plastid 46.94 94.22
CDY54292 Canola cytosol 74.28 92.6
CDY25786 Canola cytosol 74.28 92.6
AT1G23460.1 Thale cress extracellular 74.64 90.22
CDY44150 Canola extracellular, golgi, plastid 78.96 87.45
CDY11585 Canola extracellular 65.29 77.73
CDY47139 Canola extracellular 64.75 77.09
Solyc09g098270.2.1 Tomato cytosol 54.14 69.52
PGSC0003DMT400055713 Potato extracellular 55.04 66.81
Solyc04g025440.2.1 Tomato extracellular 55.22 66.74
PGSC0003DMT400080722 Potato extracellular 55.04 66.52
GSMUA_Achr7P01870_001 Banana cytosol 47.12 59.55
GSMUA_Achr4P22100_001 Banana extracellular 47.12 56.47
EES04449 Sorghum extracellular 43.35 46.35
Zm00001d015129_P001 Maize mitochondrion 41.91 45.16
Os02t0130200-01 Rice extracellular, golgi 40.83 44.69
TraesCS6B01G118000.2 Wheat extracellular, golgi, vacuole 42.27 44.51
HORVU6Hr1G015390.2 Barley extracellular, golgi 42.27 44.51
TraesCS6A01G084500.1 Wheat extracellular, golgi, vacuole 41.73 44.19
TraesCSU01G113500.1 Wheat extracellular, golgi, vacuole 41.73 43.94
CDY48768 Canola extracellular 32.37 41.38
CDY54312 Canola extracellular 32.91 41.22
CDY57689 Canola extracellular 33.09 41.16
CDY14791 Canola extracellular 32.01 41.11
CDY06902 Canola extracellular 31.65 40.65
CDX79907 Canola extracellular 31.65 40.46
CDX69569 Canola extracellular 31.3 39.64
CDX67693 Canola extracellular 30.76 39.49
CDY35976 Canola extracellular 29.86 39.43
CDY28005 Canola extracellular 29.86 39.43
CDY09873 Canola extracellular 31.12 39.41
CDX74019 Canola extracellular 30.94 39.36
CDX72025 Canola extracellular 30.58 39.35
CDY07963 Canola extracellular 30.94 39.27
CDY41695 Canola extracellular 30.58 39.08
CDX95284 Canola extracellular 28.24 38.86
CDY67535 Canola extracellular 20.68 36.98
CDY47032 Canola extracellular 26.62 36.72
CDY56952 Canola extracellular 27.52 36.34
CDX72553 Canola extracellular 26.26 36.23
CDY37571 Canola cytosol 24.28 36.1
CDY38648 Canola cytosol 24.28 36.1
CDX74418 Canola extracellular 27.34 36.02
CDY69377 Canola extracellular 25.9 36.0
CDY39404 Canola extracellular 25.72 35.84
KRG99363 Soybean extracellular 56.47 35.64
CDY15246 Canola extracellular 31.3 35.44
CDY50769 Canola extracellular 21.76 35.38
CDX89966 Canola extracellular 31.12 35.23
CDX77909 Canola extracellular 30.94 35.03
CDX73440 Canola extracellular 25.0 34.75
CDY39399 Canola extracellular 25.0 34.75
CDX93644 Canola extracellular 29.32 34.53
CDY43307 Canola extracellular 29.32 34.46
CDX75843 Canola extracellular 27.88 34.22
CDY58462 Canola extracellular 27.88 34.22
CDY71357 Canola extracellular, vacuole 19.06 33.44
CDY13645 Canola extracellular 28.24 33.4
CDX97704 Canola extracellular 27.34 33.33
CDX83631 Canola extracellular 28.24 33.33
CDX97703 Canola extracellular 26.8 32.96
CDY30105 Canola extracellular 26.62 32.96
CDY30107 Canola extracellular 26.98 32.89
CDX85471 Canola extracellular 23.74 32.51
CDY16952 Canola extracellular 24.64 31.57
CDY02729 Canola extracellular 24.28 31.54
CDX68839 Canola cytosol 22.84 31.28
CDY37962 Canola extracellular, golgi, vacuole 29.68 31.02
CDY47212 Canola extracellular 29.86 30.97
CDY50367 Canola extracellular, golgi 29.86 30.97
CDX93397 Canola extracellular, golgi, vacuole 29.68 30.96
CDY54228 Canola extracellular, golgi, vacuole 29.32 30.87
CDX75239 Canola cytosol 22.48 30.79
CDY20612 Canola extracellular 29.14 30.51
CDY20962 Canola extracellular, golgi, vacuole 29.14 30.51
CDY34877 Canola extracellular, golgi 26.26 29.86
CDX69397 Canola extracellular 21.58 29.7
CDY61868 Canola extracellular 29.32 29.69
CDY06100 Canola extracellular 21.4 27.87
CDY39884 Canola extracellular 22.12 27.64
Protein Annotations
MapMan:19.4.1.4Gene3D:2.160.20.10Gene3D:3.40.630.20GO:A0A078HS52UniProt:A0A078HS52EnsemblPlants:CDY41445
ProteinID:CDY41445ProteinID:CDY41445.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787
GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00073045001InterPro:Glyco_hydro_28InterPro:IPR012334InterPro:IPR036440PFAM:PF00295
ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF29InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceInterPro:Peptidase_C15-like_sf
SUPFAM:SSF51126SUPFAM:SSF53182TMHMM:TMhelixUniParc:UPI0004EDFA45SEG:seg:
Description
BnaA08g20470DBnaA08g20470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS52]
Coordinates
chrLK032498:-:50594..53825
Molecular Weight (calculated)
61082.7 Da
IEP (calculated)
6.562
GRAVY (calculated)
-0.202
Length
556 amino acids
Sequence
(BLAST)
001: MELLLLVVCD YVYYHSLRFA EQKGHKSLFV HVPLFSKISE DTQMQFVPSH MIDTLQGQHK RIRFFYLPGW CNKLIKFSVI KYTKESLHMM DKLFILSLIG
101: ILMVTAYGAA AKMVYTDLDI LEKLENFDIP EDDADDYDTK LFDWPSFTSR SSGKNLVNVD TFGAAGDGVS DDTQAFVSAW NKACGMPKSV LLVPQGRTYL
201: VNATKFNGPC ETKLVIQIDG KIVAPDEPSN WDPKFQRIWL EFSKLKGVVF QGNGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG VKVTGLTIQN
301: SQQMNFIIAR SNSVRVSKVM VSSPGDSPNT DGIHITGSTN VVLQDCKIGT GDDCVSIVNA SSNIKMKKIY CGPGHGISIG SLGNNNSTGI VTNVVLDTAF
401: LKETTNGLRI KTYQGGSGYV QDVRFTNVQM QDVSNPILID QFYCDNPTSC QNQTSAVKIS QIMYRNITGT TKSEKAIKFA CSDTVPCSHI VLNNVNLEGR
501: DGQVEAYCNS AEGFGYGVIH PSADCLYSHD NKGLDQSHKS EPVLVTEEAE TGHDEL
Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.