Factsheet for PGSC0003DMT400080722

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g025440.2.1	Tomato	extracellular	95.87	95.87
CDY04708	Canola	plastid	43.04	71.48
PGSC0003DMT400055713	Potato	extracellular	69.13	69.43
Bra024602.1-P	Field mustard	cytosol	64.35	66.97
AT1G23460.1	Thale cress	extracellular	66.96	66.96
Bra012375.1-P	Field mustard	cytosol	64.57	66.59
CDY25786	Canola	cytosol	64.57	66.59
CDY54292	Canola	cytosol	64.57	66.59
Bra016345.1-P	Field mustard	extracellular	66.3	65.17
GSMUA_Achr7P01870_001	Banana	cytosol	59.35	62.05
AT1G70500.1	Thale cress	extracellular	62.83	61.75
CDY11585	Canola	extracellular	62.61	61.67
CDY47139	Canola	extracellular	62.17	61.24
Bra016213.1-P	Field mustard	extracellular	62.17	61.24
CDY44150	Canola	extracellular, golgi, plastid	66.09	60.56
GSMUA_Achr4P22100_001	Banana	extracellular	58.26	57.76
CDY41445	Canola	endoplasmic reticulum	66.52	55.04
EES04449	Sorghum	extracellular	50.43	44.62
Zm00001d015129_P001	Maize	mitochondrion	50.0	44.57
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	50.87	44.32
HORVU6Hr1G015390.2	Barley	extracellular, golgi	50.22	43.75
Os02t0130200-01	Rice	extracellular, golgi	48.26	43.7
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	49.78	43.37
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	49.35	43.24
PGSC0003DMT400001638	Potato	extracellular, plastid	41.52	42.54
PGSC0003DMT400017691	Potato	extracellular	31.3	41.03
PGSC0003DMT400070039	Potato	cytosol	33.7	37.8
PGSC0003DMT400008955	Potato	extracellular	27.83	36.78
PGSC0003DMT400056828	Potato	extracellular	31.52	36.43
PGSC0003DMT400007095	Potato	cytosol	33.91	35.86
PGSC0003DMT400013344	Potato	extracellular	36.3	35.38
KRG99363	Soybean	extracellular	66.52	34.73
PGSC0003DMT400077010	Potato	cytosol	34.78	34.56
PGSC0003DMT400035162	Potato	extracellular	36.52	32.88
PGSC0003DMT400075723	Potato	extracellular	34.57	32.72
PGSC0003DMT400035101	Potato	extracellular, golgi	33.26	31.81

Protein Annotations

EntrezGene:102578221	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:M1D3W1	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG403031436	PGSC:PGSC0003DMG403031436	EnsemblPlants:PGSC0003DMT400080722
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002956B7E	RefSeq:XP_006350275.1	SEG:seg	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG403031436]

Coordinates

chr4:-:16743479..16749724

Molecular Weight (calculated)

49612.8 Da

IEP (calculated)

6.066

GRAVY (calculated)

-0.124

Length

460 amino acids

Sequence
(BLAST)

001: MAKILFFLFL VWLMGALGAA NTNFLDDVIL SELDDLDVED GDEAELFDLP RWGIERGNKI LVNVDSFGAV GDGASDDTKA FVDAWKQACS TPKSVFFVPA
101: GRSYLVNATR FRGPCVGILR VQIEGTIVAP DDPKNWNFAK NGRIWLGFFN LTGALFQGGG VIDGSGSKWW AASCKKNKAN PCVAAPTALT IYGSSGIKVK
201: DLTIQNGQQM NFAISRSDSI RITGVTVSAP EDSPNTDGIH ITESTNVVLQ NSKIGTGDDC VSIVNASSSI KMKRIYCGPG HGISIGSLGK DNSIGIVTGV
301: VLDNAFLRGT TNGLRIKTWQ GGSGYVRAVR FQNVRMQNVS NPIIIDQFYC DSPKSCQNQT SAVEISEIVY RNVSGTSKSQ KAIKFACSDN VPCSHIVLNN
401: INLETRDGTA EVYCNSATGI GYGYIHPSAE CLNSSDKKIK QKTDAGLDEP REEYIVHTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.