Factsheet for PGSC0003DMT400070039

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015530.1.1	Tomato	cytosol	74.63	78.06
VIT_08s0007g07750.t01	Wine grape	extracellular	54.39	50.45
VIT_08s0007g07760.t01	Wine grape	extracellular	52.68	49.66
VIT_08s0007g07780.t01	Wine grape	extracellular	52.2	49.31
VIT_08s0007g07770.t01	Wine grape	extracellular	52.93	49.09
VIT_08s0007g08330.t01	Wine grape	extracellular	52.93	48.87
KRH71979	Soybean	extracellular	50.24	48.13
PGSC0003DMT400017691	Potato	extracellular	40.98	47.86
AT2G41850.1	Thale cress	extracellular	47.32	44.8
AT3G57510.1	Thale cress	extracellular	47.07	44.78
CDX72025	Canola	extracellular	46.83	44.44
Bra007332.1-P	Field mustard	extracellular	46.83	44.44
KRH66955	Soybean	extracellular	50.24	44.4
CDY48768	Canola	extracellular	47.07	44.37
Bra003286.1-P	Field mustard	extracellular	46.83	44.34
CDX67693	Canola	extracellular	46.83	44.34
CDX79907	Canola	extracellular	46.83	44.14
Bra004655.1-P	Field mustard	extracellular	45.85	43.93
CDY14791	Canola	extracellular	46.34	43.88
Bra016911.1-P	Field mustard	extracellular	46.1	43.65
CDY06902	Canola	extracellular	45.85	43.42
KRH33163	Soybean	extracellular, plastid	50.0	42.98
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	40.98	42.32
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	46.1	42.19
HORVU0Hr1G038940.1	Barley	cytosol	39.76	40.35
KRG95273	Soybean	extracellular	50.73	39.77
GSMUA_Achr1P22940_001	Banana	extracellular	41.95	39.0
TraesCS4D01G243600.1	Wheat	extracellular	40.24	38.11
TraesCS4B01G244300.1	Wheat	extracellular	40.24	38.11
KXG39856	Sorghum	extracellular	39.51	37.67
TraesCS4A01G066700.1	Wheat	extracellular	39.76	37.64
PGSC0003DMT400001638	Potato	extracellular, plastid	40.0	36.53
Os03t0216800-01	Rice	extracellular	38.54	36.07
CDY61868	Canola	extracellular	45.85	34.24
PGSC0003DMT400080722	Potato	extracellular	37.8	33.7
Zm00001d048079_P001	Maize	extracellular	37.32	33.12
PGSC0003DMT400055713	Potato	extracellular	36.34	32.53
PGSC0003DMT400056828	Potato	extracellular	31.46	32.41
PGSC0003DMT400007095	Potato	cytosol	33.66	31.72
PGSC0003DMT400008955	Potato	extracellular	26.59	31.32
CDY06100	Canola	extracellular	31.22	29.98
PGSC0003DMT400013344	Potato	extracellular	33.9	29.45
PGSC0003DMT400075723	Potato	extracellular	33.17	27.98
PGSC0003DMT400077010	Potato	cytosol	31.46	27.86
PGSC0003DMT400035162	Potato	extracellular	34.63	27.79
PGSC0003DMT400035101	Potato	extracellular, golgi	30.73	26.2

Protein Annotations

EntrezGene:102601831	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:M1CLM0	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400027239	PGSC:PGSC0003DMG400027239	EnsemblPlants:PGSC0003DMT400070039	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	UniParc:UPI0002952EA0	SEG:seg	:	:	:

Description

Dehiscence polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400027239]

Coordinates

chr4:+:9846510..9856181

Molecular Weight (calculated)

44826.1 Da

IEP (calculated)

8.477

GRAVY (calculated)

-0.449

Length

410 amino acids

Sequence
(BLAST)

001: MKKNLEIISR FQRFKNLEKL DEEEDQAKVI TISVDRFGAK GDGKIDDTNA FQKAWKEVCS SSNVVNFVVS KNKKYLLKPI KFSGPCKSSI TMQIYGTLLA
101: SDDTSDYNKD SRHWLIFDSV QKLVVGGAGV INGNGKIWWQ NSCKINKKLH CKVAPTALTF YKCNNLKVKD LKIENAQQIH LLIEKCVGVE VSKLVVSSPE
201: NSPNTDGIHI TNTQNIQISD STIGTGDDCI SIVDGSQKVL ATGITCGPGH GISIGSLGGG NSEAHVSDIH VNGAKLYGTT NGLRIKTWPG GFGSASNIKF
301: QNVAMNNVKN PIIIDQNYCD QADGPCKAEL STSIDGNHKA SSHPRQNDNP TVTQTTPQRL SIHGMNTEQH TEEQNTKQYS APLCFLPQRL SPINITTGQS
401: TRFSPFPLSE

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.