Factsheet for Os03t0216800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39856	Sorghum	extracellular	75.34	76.74
HORVU0Hr1G038940.1	Barley	cytosol	70.09	75.99
TraesCS4B01G244300.1	Wheat	extracellular	72.37	73.21
TraesCS4A01G066700.1	Wheat	extracellular	71.92	72.75
TraesCS4D01G243600.1	Wheat	extracellular	71.69	72.52
Zm00001d048079_P001	Maize	extracellular	68.49	64.94
VIT_13s0064g00760.t01	Wine grape	cytosol	39.5	52.11
GSMUA_Achr1P22940_001	Banana	extracellular	49.32	48.98
KRH71979	Soybean	extracellular	46.35	47.43
VIT_08s0007g08330.t01	Wine grape	extracellular	46.35	45.72
KRH23942	Soybean	extracellular	45.89	45.68
KRH32949	Soybean	extracellular	45.66	45.66
VIT_08s0007g07750.t01	Wine grape	extracellular	45.89	45.48
KRH13966	Soybean	extracellular	45.43	45.33
KRH39858	Soybean	extracellular	45.43	45.12
VIT_08s0007g07760.t01	Wine grape	extracellular	44.75	45.06
VIT_08s0007g07770.t01	Wine grape	extracellular	45.43	45.02
Bra029690.1-P	Field mustard	cytosol	41.55	44.83
Solyc04g015530.1.1	Tomato	cytosol	39.95	44.64
CDY14791	Canola	extracellular	43.84	44.34
Bra016911.1-P	Field mustard	extracellular	43.84	44.34
CDY06902	Canola	extracellular	43.61	44.11
VIT_08s0007g07780.t01	Wine grape	extracellular	43.61	44.01
CDY48768	Canola	extracellular	43.61	43.91
Bra004655.1-P	Field mustard	extracellular	42.69	43.69
CDX79907	Canola	extracellular	43.38	43.68
PGSC0003DMT400017691	Potato	extracellular	34.93	43.59
CDX74019	Canola	extracellular	43.38	43.48
CDY35976	Canola	extracellular	41.78	43.47
CDY28005	Canola	extracellular	41.78	43.47
Bra001279.1-P	Field mustard	extracellular	43.15	43.25
VIT_13s0064g00750.t01	Wine grape	cytosol	44.98	43.2
CDY07963	Canola	extracellular	42.92	42.92
CDX72025	Canola	extracellular	42.01	42.59
Bra007332.1-P	Field mustard	extracellular	41.78	42.36
AT2G41850.1	Thale cress	extracellular	41.78	42.26
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	43.15	42.19
Solyc01g087280.1.1	Tomato	extracellular	40.87	42.12
AT3G07970.1	Thale cress	extracellular	42.01	41.91
Bra003286.1-P	Field mustard	extracellular	41.1	41.57
CDX67693	Canola	extracellular	41.1	41.57
KRH33163	Soybean	extracellular, plastid	44.75	41.09
KRH66955	Soybean	extracellular	43.15	40.73
Solyc10g080210.1.1	Tomato	extracellular	42.24	40.48
AT3G57510.1	Thale cress	extracellular	39.5	40.14
Os03t0808000-00	Rice	extracellular	41.32	39.18
PGSC0003DMT400070039	Potato	cytosol	36.07	38.54
Os05t0279900-00	Rice	cytosol	27.63	38.41
Os05t0542800-02	Rice	extracellular	35.84	36.85
Os01t0296200-00	Rice	extracellular	22.37	36.84
Os01t0637500-00	Rice	cytosol, extracellular	28.08	36.39
KRG95273	Soybean	extracellular	43.38	36.33
Os05t0578600-01	Rice	cytosol, extracellular	24.89	34.94
Os05t0542900-01	Rice	extracellular	33.33	32.81
Os01t0549000-00	Rice	extracellular	21.0	32.39
Os02t0130200-01	Rice	extracellular, golgi	36.53	31.5
CDY61868	Canola	extracellular	39.27	31.33
CDY06100	Canola	extracellular	29.0	29.74
Os01t0172900-00	Rice	nucleus	18.95	28.14
Os01t0636500-01	Rice	extracellular	34.47	28.07
Os01t0329300-01	Rice	plastid	34.25	19.76

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4332070	MapMan:50.3.2	ProteinID:ABF94653.1	EMBL:AK105520	ProteinID:BAF11301.1
ProteinID:BAS82979.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os03g0216800	EnsemblPlants:Os03t0216800-01
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF95	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q10PY4	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000DB4C9E
RefSeq:XP_015630260.1	SEG:seg	:	:	:	:

Description

Similar to Polygalacturonase B (Fragment). (Os03t0216800-01)

Coordinates

chr3:+:6152114..6155182

Molecular Weight (calculated)

47889.9 Da

IEP (calculated)

6.264

GRAVY (calculated)

-0.098

Length

438 amino acids

Sequence
(BLAST)

001: MGPRKLHLAS ISALSIFLYV FAHTNSAQAF PVADGTYPPE AEGPAAESSD MDEQLELTPG PQPRVVDVDD YRARADAGDH TEAFLQAWKE ACNSSDYPSV
101: LLVPEGKTYL LMPVSFNGPC RATTITATIR GTLEAPSNRS VWLDRDLQEW ITFDNIDHLR VLGGGTLNGN GHQWWINSCK TNRSMRCVTG PTALYFRRCN
201: HLVVEGLQIR DSMQMHVVIA YSWRVLVSRL LITAPGWSPN TDGIHVSNSR EVLMSGCIIS TGDDCISIVT GSMFIRATGI FCGPGHGISI GSLGANKSWA
301: HVSDVLVEKA TLVGTTNGVR IKTWQGGDGH AERITFQDIT MHNVTNPVII DQNYCDSMTP CHEQGSAVAI NNIRYRNIRG TSSSKVAINF VCSNSVHCDG
401: IVMQDVSLVG EGSYVSCSYM NARVVELGYN FPYCRAEM

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.