Factsheet for VIT_08s0007g07750.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07760.t01	Wine grape	extracellular	95.25	96.78
VIT_08s0007g07770.t01	Wine grape	extracellular	96.38	96.38
VIT_08s0007g07780.t01	Wine grape	extracellular	91.63	93.32
VIT_08s0007g08330.t01	Wine grape	extracellular	84.16	83.78
KRH71979	Soybean	extracellular	58.6	60.51
Solyc04g015530.1.1	Tomato	cytosol	53.62	60.46
VIT_13s0064g00760.t01	Wine grape	cytosol	43.89	58.43
AT2G41850.1	Thale cress	extracellular	54.52	55.66
KRH66955	Soybean	extracellular	58.37	55.6
AT3G57510.1	Thale cress	extracellular	53.39	54.76
KRH33163	Soybean	extracellular, plastid	58.82	54.51
PGSC0003DMT400070039	Potato	cytosol	50.45	54.39
CDY14791	Canola	extracellular	53.17	54.27
CDY48768	Canola	extracellular	53.39	54.25
CDX79907	Canola	extracellular	53.39	54.25
Bra004655.1-P	Field mustard	extracellular	52.49	54.21
Bra016911.1-P	Field mustard	extracellular	52.94	54.04
CDX72025	Canola	extracellular	52.71	53.94
CDY06902	Canola	extracellular	52.71	53.81
Bra003286.1-P	Field mustard	extracellular	52.49	53.58
CDX67693	Canola	extracellular	52.49	53.58
Bra007332.1-P	Field mustard	extracellular	51.81	53.01
Solyc10g080210.1.1	Tomato	extracellular	54.52	52.74
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	47.06	52.39
VIT_13s0064g00750.t01	Wine grape	cytosol	53.85	52.19
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	52.26	51.56
KRG95273	Soybean	extracellular	58.37	49.33
HORVU0Hr1G038940.1	Barley	cytosol	44.34	48.51
GSMUA_Achr1P22940_001	Banana	extracellular	46.61	46.71
TraesCS4A01G066700.1	Wheat	extracellular	45.02	45.96
Os03t0216800-01	Rice	extracellular	45.48	45.89
KXG39856	Sorghum	extracellular	44.34	45.58
TraesCS4B01G244300.1	Wheat	extracellular	44.57	45.5
TraesCS4D01G243600.1	Wheat	extracellular	44.34	45.27
VIT_09s0002g06380.t01	Wine grape	cytosol	38.46	41.06
CDY61868	Canola	extracellular	50.91	40.98
Zm00001d048079_P001	Maize	extracellular	42.53	40.69
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	33.94	40.43
VIT_09s0002g06650.t01	Wine grape	extracellular	36.43	39.85
CDY06100	Canola	extracellular	37.33	38.64
VIT_17s0000g05670.t01	Wine grape	extracellular	34.16	38.42
VIT_17s0000g05660.t01	Wine grape	extracellular	33.03	37.73
VIT_09s0002g06610.t01	Wine grape	extracellular	33.03	37.53
VIT_09s0002g06580.t01	Wine grape	cytosol	33.03	37.34
VIT_14s0060g00620.t01	Wine grape	extracellular	37.56	35.78
VIT_07s0005g02090.t01	Wine grape	extracellular	37.1	35.27
VIT_14s0066g01060.t01	Wine grape	extracellular	37.56	34.37
VIT_05s0020g00420.t01	Wine grape	extracellular	36.88	34.17
VIT_01s0127g00120.t01	Wine grape	extracellular	33.94	31.32
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	35.29	30.12

Protein Annotations

EntrezGene:100255477	wikigene:100255477	EntrezGene:100262351	wikigene:100262351	Gene3D:2.160.20.10	MapMan:21.3.5.1.1
EMBL:AM475662	ProteinID:CAN64004	ProteinID:CAN64004.1	ProteinID:CBI29907	ProteinID:CBI29907.3	UniProt:D7TI31
EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100255477	wikigene:LOC100255477	EntrezGene:LOC100262351	wikigene:LOC100262351	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF3	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00015CA9E2	ArrayExpress:VIT_08s0007g07750	EnsemblPlantsGene:VIT_08s0007g07750
EnsemblPlants:VIT_08s0007g07750.t01	RefSeq:XP_002277214	RefSeq:XP_002277214.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:21197504..21200034

Molecular Weight (calculated)

47250.6 Da

IEP (calculated)

7.712

GRAVY (calculated)

-0.279

Length

442 amino acids

Sequence
(BLAST)

001: MSLQRRFIPF LIVFLLSFPC YYGLQGNPPY DYLDDAYAYD SSRAYESWPW RKFGSKIMGS KRIGKVGRSL ASVKTVSVND YGAKGDGSDA TEAFKKAWEA
101: ACSSQGSVLV VPKNKNYLLK PITFEGPCKS SITVQIYGTV QASADRSAYS NDMTRWLVFE NVQNLAVQGG GTINGNGKTW WENSCKVNDD LSCKDAPTAL
201: TFYNCKNLVV KNLKIQNAQQ MHVSFEKCVG VQASGLTVTA PGDSPNTDGI HVTDTQNIQI SSSVIGTGDD CISIVSGTQN LQATGITCGP GHGISIGSLG
301: SGNSEAHVSD ITVNGATLSG TTNGVRIKTW PGGSGSASNI KFQNIEMHNV KNPIIIDQKY CDGDKPCKSQ SRAVQVQNVL YQNIKGTSSS SEAIQLDCSD
401: KFPCQGIVLQ DIDIEIGGGK AAQAVCNNAK VTEKGDVSPS CT

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.