Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g05670.t01 | Wine grape | extracellular | 58.91 | 58.02 |
| Solyc03g113230.1.1 | Tomato | extracellular | 45.22 | 42.58 |
| Bra025631.1-P | Field mustard | extracellular | 44.7 | 41.0 |
| CDY56952 | Canola | extracellular | 44.19 | 40.62 |
| CDX74418 | Canola | extracellular | 44.19 | 40.52 |
| AT5G39910.1 | Thale cress | extracellular | 38.24 | 39.68 |
| VIT_09s0002g06610.t01 | Wine grape | extracellular | 39.53 | 39.33 |
| VIT_09s0002g06650.t01 | Wine grape | extracellular | 40.05 | 38.37 |
| VIT_09s0096g00850.t01 | Wine grape | cytoskeleton, cytosol, peroxisome | 35.92 | 37.47 |
| VIT_13s0064g00760.t01 | Wine grape | cytosol | 32.04 | 37.35 |
| VIT_09s0002g06580.t01 | Wine grape | cytosol | 37.47 | 37.08 |
| VIT_08s0007g07780.t01 | Wine grape | extracellular | 37.21 | 33.18 |
| VIT_08s0007g07750.t01 | Wine grape | extracellular | 37.73 | 33.03 |
| VIT_08s0007g07760.t01 | Wine grape | extracellular | 36.95 | 32.87 |
| VIT_08s0007g07770.t01 | Wine grape | extracellular | 37.21 | 32.58 |
| VIT_08s0007g08330.t01 | Wine grape | extracellular | 37.21 | 32.43 |
| VIT_09s0002g06380.t01 | Wine grape | cytosol | 33.59 | 31.4 |
| VIT_13s0064g00750.t01 | Wine grape | cytosol | 36.43 | 30.92 |
| VIT_14s0060g00620.t01 | Wine grape | extracellular | 36.18 | 30.17 |
| Zm00001d039668_P001 | Maize | plastid | 33.07 | 29.29 |
| VIT_07s0005g02090.t01 | Wine grape | extracellular | 34.88 | 29.03 |
| VIT_01s0127g00120.t01 | Wine grape | extracellular | 34.88 | 28.18 |
| VIT_05s0020g00420.t01 | Wine grape | extracellular | 34.63 | 28.09 |
| VIT_14s0066g01060.t01 | Wine grape | extracellular | 34.88 | 27.95 |
| Os01t0172900-00 | Rice | nucleus | 21.19 | 27.8 |
| VIT_01s0127g00400.t01 | Wine grape | extracellular, mitochondrion, plastid | 36.69 | 27.41 |
Protein Annotations
| EntrezGene:100250150 | wikigene:100250150 | Gene3D:2.160.20.10 | MapMan:50.3.2 | ProteinID:CBI15274 | ProteinID:CBI15274.3 |
| UniProt:D7SIG3 | EMBL:FN594950 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | EntrezGene:LOC100250150 |
| wikigene:LOC100250150 | PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF41 | InterPro:PbH1 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0001BE0B85 |
| ArrayExpress:VIT_17s0000g05660 | EnsemblPlantsGene:VIT_17s0000g05660 | EnsemblPlants:VIT_17s0000g05660.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr17:+:6151295..6153981
Molecular Weight (calculated)
42934.3 Da
IEP (calculated)
7.382
GRAVY (calculated)
-0.213
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPRSTCLL LLLASFLLTP LEGHTFNVMD YGAIGNGRTD DSEAFMKAWS DVCKASASPT FLVPGDRRFL INPVVFEGRC RSKKIKFKVD GTITAPSEPS
101: KWKCINKQCH SWISFKHVDG LVISDCMYSL TNLQALVVAR SNNVQLHDLS FKDNPHMHVV FHHCDGVKIS HISIDAPEDS PNTDGIHLKE TASVIIEHCT
201: IGTGDDCISL VDGSTHIDMR HIKCGPGHGI SIGSLGKFGL SETVEYIHVK DAQFTGTTNG VRIKTWQGGR GHARNMIFEK IRSSDSEYPI IIDQFYCDHT
301: ECHDKPNAVE IRNISYIDVK GTSKKETAVK IACSDTVPCR DIFIQNINLI YDQSGKQASA YCKNVINGYY HGVVRPNISC LQNDKLP
101: KWKCINKQCH SWISFKHVDG LVISDCMYSL TNLQALVVAR SNNVQLHDLS FKDNPHMHVV FHHCDGVKIS HISIDAPEDS PNTDGIHLKE TASVIIEHCT
201: IGTGDDCISL VDGSTHIDMR HIKCGPGHGI SIGSLGKFGL SETVEYIHVK DAQFTGTTNG VRIKTWQGGR GHARNMIFEK IRSSDSEYPI IIDQFYCDHT
301: ECHDKPNAVE IRNISYIDVK GTSKKETAVK IACSDTVPCR DIFIQNINLI YDQSGKQASA YCKNVINGYY HGVVRPNISC LQNDKLP
001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.