Factsheet for VIT_07s0005g02090.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96576	Soybean	extracellular	72.47	72.94
KRH68311	Soybean	extracellular	71.4	71.86
KRH69173	Soybean	extracellular	72.26	71.04
KRH31755	Soybean	extracellular	71.83	70.32
VIT_14s0060g00620.t01	Wine grape	extracellular	69.68	69.83
PGSC0003DMT400013344	Potato	extracellular	70.32	69.28
Solyc01g079130.1.1	Tomato	extracellular	70.11	69.07
CDY67535	Canola	extracellular	45.16	67.52
GSMUA_Achr11P...	Banana	extracellular	58.71	62.61
AT1G02460.1	Thale cress	extracellular	65.59	62.12
Bra032600.1-P	Field mustard	extracellular	65.59	62.12
Os01t0296200-00	Rice	extracellular	35.48	62.03
CDX77909	Canola	extracellular	65.16	61.71
CDX89966	Canola	extracellular	64.73	61.3
CDY15246	Canola	extracellular	64.52	61.1
Bra033328.1-P	Field mustard	extracellular	64.52	61.1
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	64.52	59.88
AT4G01890.1	Thale cress	extracellular	58.06	57.82
VIT_05s0020g00420.t01	Wine grape	extracellular	59.14	57.65
Bra000911.1-P	Field mustard	extracellular, vacuole	58.92	56.38
HORVU1Hr1G067840.1	Barley	extracellular, plastid	54.84	53.57
TraesCS1B01G322500.1	Wheat	extracellular	55.7	53.51
TraesCS1A01G311100.1	Wheat	extracellular	55.7	53.51
TraesCS1D01G311000.1	Wheat	extracellular	55.05	53.44
CDY71357	Canola	extracellular, vacuole	35.48	52.05
Zm00001d040589_P001	Maize	extracellular	55.05	51.3
GSMUA_Achr3P08400_001	Banana	extracellular	61.94	51.25
EES00620	Sorghum	extracellular	54.62	50.2
Zm00001d009057_P001	Maize	extracellular	45.38	49.88
VIT_14s0066g01060.t01	Wine grape	extracellular	41.94	40.37
VIT_13s0064g00760.t01	Wine grape	cytosol	28.6	40.06
VIT_09s0002g06380.t01	Wine grape	cytosol	35.48	39.86
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	42.8	38.42
VIT_17s0000g05670.t01	Wine grape	extracellular	32.04	37.91
VIT_01s0127g00120.t01	Wine grape	extracellular	38.92	37.79
VIT_08s0007g07760.t01	Wine grape	extracellular	34.84	37.24
VIT_08s0007g07750.t01	Wine grape	extracellular	35.27	37.1
VIT_08s0007g08330.t01	Wine grape	extracellular	35.05	36.71
VIT_09s0096g00850.t01	Wine grape	cytoskeleton, cytosol, peroxisome	29.25	36.66
VIT_09s0002g06580.t01	Wine grape	cytosol	30.75	36.57
VIT_08s0007g07780.t01	Wine grape	extracellular	33.98	36.41
VIT_08s0007g07770.t01	Wine grape	extracellular	34.41	36.2
VIT_09s0002g06650.t01	Wine grape	extracellular	31.4	36.14
VIT_09s0002g06610.t01	Wine grape	extracellular	29.46	35.22
VIT_17s0000g05660.t01	Wine grape	extracellular	29.03	34.88
VIT_13s0064g00750.t01	Wine grape	cytosol	34.19	34.87

Protein Annotations

EntrezGene:100253880	wikigene:100253880	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CCB60049	ProteinID:CCB60049.1
UniProt:F6HZD4	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100253880
wikigene:LOC100253880	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF43	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00015CA615	ArrayExpress:VIT_07s0005g02090	EnsemblPlantsGene:VIT_07s0005g02090	EnsemblPlants:VIT_07s0005g02090.t01	RefSeq:XP_002272733	RefSeq:XP_002272733.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:4503236..4505061

Molecular Weight (calculated)

50867.1 Da

IEP (calculated)

6.487

GRAVY (calculated)

-0.163

Length

465 amino acids

Sequence
(BLAST)

001: MEYSRVLSLV FCICVCCCFF STAQARSHKH SKHKHAHASP VSQISLPPCP PPEPANQTNG GHSYNSTNVF DVRSFGAVGN GIADDTQAFK AAWDTACQVE
101: ESAIVFVPYG YSFMIQSTIF TGPCQSRLVF QVDGTLTPPD GPDSWPQNNS KRQWLVFYRI NEMSLQGGGL IDGRGENWWN LPCKPHKGIN GTTLPGPCDS
201: PIAIRFFMSS NLTVQGLRIK NSPQFNFRFD NCRDVHIESI YITAPALSPN TDGIHIENTN NVKIYNSVVS NGDDCVSIGS GCYDVDIKNI TCGPSHGISI
301: GSLGNHNSRA CVSNITVRDS VLKYSDNGVR IKTWQGGSGA VSGVTFSNLH MNNVRNPIII DQFYCLAKQC MNQTSAVLVS NIIYSNIKGT YDIRSPAMHF
401: ACSDSVPCTN LTLSDVELLP AQGELMLDPF CWNAYGDLET LTIPPVSCLM EGTPRSALEN YLDHC

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.