Factsheet for GSMUA_Achr9P16670_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	extracellular	65.27	75.0
Os01t0296200-00	Rice	extracellular	38.32	72.18
GSMUA_Achr3P08400_001	Banana	extracellular	76.05	67.79
PGSC0003DMT400007095	Potato	cytosol	56.49	65.06
VIT_07s0005g02090.t01	Wine grape	extracellular	59.88	64.52
KRH69173	Soybean	extracellular	59.28	62.79
KRG96576	Soybean	extracellular	57.68	62.55
KRH31755	Soybean	extracellular	59.28	62.53
HORVU1Hr1G067840.1	Barley	extracellular, plastid	58.88	61.97
VIT_14s0060g00620.t01	Wine grape	extracellular	57.29	61.85
TraesCS1D01G311000.1	Wheat	extracellular	59.08	61.8
KRH68311	Soybean	extracellular	56.89	61.69
TraesCS1B01G322500.1	Wheat	extracellular	59.28	61.36
TraesCS1A01G311100.1	Wheat	extracellular	59.08	61.16
Solyc01g100980.2.1	Tomato	extracellular	57.88	60.92
KRG96690	Soybean	extracellular	55.29	60.35
Zm00001d009057_P001	Maize	extracellular	50.9	60.28
CDY67535	Canola	extracellular	37.13	59.81
Zm00001d040589_P001	Maize	extracellular	59.28	59.52
GSMUA_Achr8P06220_001	Banana	extracellular	55.49	59.4
PGSC0003DMT400013344	Potato	extracellular	55.69	59.11
Solyc01g079130.1.1	Tomato	extracellular	55.49	58.9
EES00620	Sorghum	extracellular	58.28	57.71
GSMUA_Achr8P22240_001	Banana	extracellular	53.09	55.77
AT1G02460.1	Thale cress	extracellular	54.49	55.6
Bra032600.1-P	Field mustard	extracellular	54.49	55.6
CDX77909	Canola	extracellular	53.89	54.99
CDX89966	Canola	extracellular	53.69	54.79
CDY15246	Canola	extracellular	53.69	54.79
Bra033328.1-P	Field mustard	extracellular	53.49	54.58
AT4G01890.1	Thale cress	extracellular	50.3	53.96
Bra000911.1-P	Field mustard	extracellular, vacuole	51.5	53.09
CDY71357	Canola	extracellular, vacuole	30.94	48.9
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	36.33	47.64
GSMUA_AchrUn_...	Banana	extracellular	24.35	42.36
GSMUA_Achr2P14330_001	Banana	extracellular	37.33	41.19
GSMUA_Achr4P02960_001	Banana	extracellular	38.92	41.05
GSMUA_Achr5P09080_001	Banana	extracellular	38.92	40.04
GSMUA_Achr6P22080_001	Banana	extracellular	38.32	39.59
GSMUA_Achr7P01870_001	Banana	cytosol	34.53	39.32
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	30.74	38.79
GSMUA_Achr1P12720_001	Banana	extracellular	31.74	38.78
GSMUA_Achr1P27280_001	Banana	extracellular	38.32	37.65
GSMUA_AchrUn_...	Banana	mitochondrion	30.14	37.1
GSMUA_Achr4P22100_001	Banana	extracellular	33.73	36.42
GSMUA_Achr4P13200_001	Banana	extracellular	30.54	36.26
GSMUA_Achr3P13670_001	Banana	extracellular	32.53	35.82
GSMUA_Achr11P...	Banana	extracellular	29.74	35.82
GSMUA_Achr9P22320_001	Banana	extracellular	29.34	35.59
GSMUA_Achr1P22940_001	Banana	extracellular	30.94	35.15
GSMUA_Achr4P06370_001	Banana	extracellular	31.54	20.95

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr9G16670_001	EnsemblPlants:GSMUA_Achr9P16670_001
EnsemblPlants:GSMUA_Achr9T16670_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0U0X4	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF43	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002959B89	SEG:seg	:	:	:

Description

Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr9G16670_001]

Coordinates

chr9:-:11319631..11321744

Molecular Weight (calculated)

53897.1 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.132

Length

501 amino acids

Sequence
(BLAST)

001: MEVTRILLLL VFISSTFCCT PAYGRARLHM KRLRYSIALP PMAEPPSPSF IRRLPALAPE PAIRGNSGLS STNSTSGQPP RPPPPEPIDG NHGWNSTNST
101: AVLDVRALGA IGDGVSDDTE ALKSAWEAAC QGGPGLILLP QGYTFKIQST IFAGPCRSEL TFQVDGTITP PDGPDEWPQS ISRRQWLVFY RVNGMKLQGG
201: GLIDGKGEKW WNLPCKPHKG PNGTTLPGTC DSPVALRFFM SSNLTVRELR IQNSPQFHFR FDNCRNVTID TICISSPALS PNTDGIHVEN TELVGIYNSV
301: ISNGDDCVSI GAGSVGISIV NVTCGPSHGI SIGSLGKQNT RACVANITVR NAVIKHSDNG VRIKTWQGGS GSVSSISFEN IRMDTVRNPI IIDQFYCLSK
401: SCLNQTSAVY VSDVSYTGIR GTYDVRSPPI HLGCSDSVPC TNITLSDVEL LPAQGDFISD PFCWNAYGAT ETLTIPPVSC LSEGLPQSII DIDSDKCYRG
501: S

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.