Factsheet for Solyc01g100980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007095	Potato	cytosol	86.97	95.17
VIT_14s0060g00620.t01	Wine grape	extracellular	68.49	70.26
KRG96690	Soybean	extracellular	61.34	63.62
Solyc01g079130.1.1	Tomato	extracellular	62.4	62.92
GSMUA_Achr11P...	Banana	extracellular	56.51	61.7
Os01t0296200-00	Rice	extracellular	33.82	60.53
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	60.92	57.88
HORVU1Hr1G067840.1	Barley	extracellular, plastid	54.62	54.62
Solyc04g008230.2.1	Tomato	nucleus	56.09	54.49
TraesCS1B01G322500.1	Wheat	extracellular	54.83	53.93
TraesCS1A01G311100.1	Wheat	extracellular	54.62	53.72
TraesCS1D01G311000.1	Wheat	extracellular	53.78	53.44
Zm00001d040589_P001	Maize	extracellular	54.2	51.7
Zm00001d009057_P001	Maize	extracellular	44.54	50.12
EES00620	Sorghum	extracellular	53.15	50.0
GSMUA_Achr3P08400_001	Banana	extracellular	59.03	50.0
Solyc12g009420.1.1	Tomato	extracellular	34.03	39.8
Solyc07g015870.2.1	Tomato	extracellular	37.4	39.64
Solyc05g005170.2.1	Tomato	nucleus	42.02	39.37
Solyc04g015530.1.1	Tomato	cytosol	32.14	39.03
Solyc08g060970.2.1	Tomato	nucleus	32.14	38.54
Solyc09g098270.2.1	Tomato	cytosol	34.45	37.88
Solyc05g005040.2.1	Tomato	extracellular	37.4	37.79
Solyc06g068040.2.1	Tomato	nucleus	34.24	37.3
Solyc01g087280.1.1	Tomato	extracellular	32.98	36.94
Solyc03g116500.2.1	Tomato	nucleus	34.87	36.73
Solyc03g113230.1.1	Tomato	extracellular	31.09	36.01
Solyc04g025440.2.1	Tomato	extracellular	34.66	35.87
Solyc03g116580.2.1	Tomato	extracellular	32.14	35.01
Solyc10g080210.1.1	Tomato	extracellular	33.61	35.01

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4B1C8
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF13	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc01g100980.2	EnsemblPlants:Solyc01g100980.2.1	TMHMM:TMhelix
UniParc:UPI00027678BE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:90853500..90856129

Molecular Weight (calculated)

52161.4 Da

IEP (calculated)

7.513

GRAVY (calculated)

-0.114

Length

476 amino acids

Sequence
(BLAST)

001: MEFTRFCFLV FSVFLISYVF SVHGRFYDYP KVSRFRALSQ ISMPPFPAPA PGPGPAPAPE PKGDPKTENV KNSSNDYAAG IFNVLSYGAV GDGVIDDTQA
101: FKMAWDTACQ VDSAILLVPK HYSFMIQSTI FTGPCKSGLI FKVEGTIMPP DGPDSWPKGV SKKQWLVFYR IDGMSMQGGG LIDGKGEKWW NLPCKPHKGI
201: NGTTLPGPCD SPVAIKFFMS SNLTVQGLKI KNSPLFHFRF DSCRGVHVDS LYIKAPRQSP NTDGIHIENT NDVTIRNSII SNGDDCISIG AGCYNVDIRN
301: MTCGPSHGIS IGSLGIRNSR ACVSNITVED STIKYSDNGV RIKTWQGGFG TVSNINFNNI RMESVRNPII LDQYYCSTKS CANQTSAVYI SDVIYSNIKG
401: TYDVRSPPMH LACSNSVPCT NLTFLDVELY PAQGQKILEP FCWNAYGALI TLTIPPVFCL LEGTPQSLPS NDLDQC

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.