Factsheet for GSMUA_Achr3P08400_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	extracellular	60.32	77.75
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	67.79	76.05
Os01t0296200-00	Rice	extracellular	33.45	70.68
PGSC0003DMT400007095	Potato	cytosol	49.29	63.68
VIT_14s0060g00620.t01	Wine grape	extracellular	51.42	62.28
VIT_07s0005g02090.t01	Wine grape	extracellular	51.25	61.94
HORVU1Hr1G067840.1	Barley	extracellular, plastid	51.78	61.13
TraesCS1A01G311100.1	Wheat	extracellular	52.31	60.74
TraesCS1D01G311000.1	Wheat	extracellular	51.6	60.54
TraesCS1B01G322500.1	Wheat	extracellular	52.14	60.54
KRG96690	Soybean	extracellular	49.29	60.35
KRH69173	Soybean	extracellular	50.18	59.62
KRG96576	Soybean	extracellular	48.93	59.52
Zm00001d009057_P001	Maize	extracellular	44.66	59.34
KRH31755	Soybean	extracellular	50.0	59.16
Solyc01g100980.2.1	Tomato	extracellular	50.0	59.03
PGSC0003DMT400013344	Potato	extracellular	49.47	58.9
KRH68311	Soybean	extracellular	48.22	58.66
Zm00001d040589_P001	Maize	extracellular	51.96	58.52
CDY67535	Canola	extracellular	32.21	58.2
Solyc01g079130.1.1	Tomato	extracellular	48.75	58.05
GSMUA_Achr8P06220_001	Banana	extracellular	48.04	57.69
EES00620	Sorghum	extracellular	51.25	56.92
AT4G01890.1	Thale cress	extracellular	45.73	55.03
Bra032600.1-P	Field mustard	extracellular	48.04	54.99
GSMUA_Achr8P22240_001	Banana	extracellular	46.62	54.93
AT1G02460.1	Thale cress	extracellular	47.51	54.38
CDX77909	Canola	extracellular	47.51	54.38
CDX89966	Canola	extracellular	47.15	53.97
Bra033328.1-P	Field mustard	extracellular	46.98	53.77
CDY15246	Canola	extracellular	46.98	53.77
Bra000911.1-P	Field mustard	extracellular, vacuole	46.09	53.29
CDY71357	Canola	extracellular, vacuole	27.94	49.53
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	32.56	47.91
GSMUA_Achr5P09080_001	Banana	extracellular	35.59	41.07
GSMUA_Achr4P02960_001	Banana	extracellular	34.7	41.05
GSMUA_AchrUn_...	Banana	extracellular	21.0	40.97
GSMUA_Achr6P22080_001	Banana	extracellular	35.05	40.62
GSMUA_Achr7P01870_001	Banana	cytosol	31.32	40.0
GSMUA_Achr2P14330_001	Banana	extracellular	32.21	39.87
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	27.4	38.79
GSMUA_Achr1P12720_001	Banana	extracellular	28.29	38.78
GSMUA_Achr1P27280_001	Banana	extracellular	34.7	38.24
GSMUA_Achr4P22100_001	Banana	extracellular	30.43	36.85
GSMUA_Achr4P13200_001	Banana	extracellular	27.58	36.73
GSMUA_Achr3P13670_001	Banana	extracellular	29.36	36.26
GSMUA_Achr9P22320_001	Banana	extracellular	26.51	36.08
GSMUA_Achr1P22940_001	Banana	extracellular	28.11	35.83
GSMUA_AchrUn_...	Banana	mitochondrion	25.8	35.63
GSMUA_Achr11P...	Banana	extracellular	25.62	34.62
GSMUA_Achr4P06370_001	Banana	extracellular	28.11	20.95

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr3G08400_001	EnsemblPlants:GSMUA_Achr3P08400_001	EnsemblPlants:GSMUA_Achr3T08400_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SCV7	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF13	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
UniParc:UPI0002961DA3	SEG:seg	:	:	:	:

Description

Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08400_001]

Coordinates

chr3:-:5969268..5977349

Molecular Weight (calculated)

59885.9 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.066

Length

562 amino acids

Sequence
(BLAST)

001: MTFSNIMLDK YLPYLGFVPA HLAVFIGQAQ MEVSKMLLLL VLVWSGFGCT SVHGRFHYGI ARPPMAEPPS QAVVPANSIS LPPALAPQPV HPSYSGNSAN
101: STSTGYSGNS TNTTSAYPPS EPIGAGYSGN STNSTSTSTP VSSPPPLPAP VDAGTATRNS SNATAVLDVR AFGAVGDGVA DDTEAFKTAW DIACQDGPGT
201: ILVPQGYAFK ILSTIFAGPC HSELTFQVDG TIMPPDGPDE WPRNNNRRQW LVFYRANGLK LQGRGVIDGR GEKWWNLPCK PHKGPNGTTL SGPCDSPVAL
301: RFFMSSNLIV HGIRVQNSPQ FHFRFDNCRN VTVDAISISS PALSPNTDGI HVENTEMVGI YNSVISSGDD CISIGAGSIN IDIRNVTCGP SHGISIGSLG
401: TKNTRACVTN ITVKNSVIRH SDNGVRIKTW QGGSGSVSSV SFDNIRMDAV KNPIIIDQYY CLSKSCKNQT SAVYVSDVSY TGIKGTYDVR SPPIHFGCSD
501: SVPCTNITLS EVVLLPAQAY FISNPFCWNV YGVMATQTIP PVSCLLEGFP SSIMAIGSDR CY

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.