Factsheet for GSMUA_Achr1P27280_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22080_001	Banana	extracellular	78.82	82.89
GSMUA_Achr5P09080_001	Banana	extracellular	76.67	80.29
GSMUA_Achr4P02960_001	Banana	extracellular	69.8	74.95
Os05t0578600-01	Rice	cytosol, extracellular	42.94	70.19
HORVU3Hr1G031180.1	Barley	extracellular	19.22	69.5
Os01t0637500-00	Rice	cytosol, extracellular	45.88	69.23
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	47.25	63.09
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	62.94	61.97
Solyc05g005170.2.1	Tomato	nucleus	60.0	60.24
PGSC0003DMT400035162	Potato	extracellular	59.8	59.69
TraesCS1A01G418000.1	Wheat	extracellular	59.61	59.61
HORVU3Hr1G056270.10	Barley	extracellular	62.16	59.59
AT5G14650.1	Thale cress	extracellular	50.78	59.54
KRH56581	Soybean	extracellular	51.18	59.45
TraesCS3A01G225800.2	Wheat	extracellular	62.75	59.37
KRG93260	Soybean	extracellular	51.57	59.37
TraesCS3D01G223900.1	Wheat	extracellular	62.35	59.33
CDY09873	Canola	extracellular	50.98	59.23
CDX69569	Canola	extracellular	50.98	59.23
Bra008748.1-P	Field mustard	extracellular	50.98	59.23
EES01142	Sorghum	extracellular	61.76	59.21
Os01t0636500-01	Rice	extracellular	62.16	58.92
TraesCS1B01G448100.1	Wheat	extracellular	61.18	58.87
TraesCS3B01G258600.2	Wheat	extracellular	61.76	58.66
Zm00001d011444_P002	Maize	extracellular	61.57	58.04
EES20001	Sorghum	extracellular	60.98	57.91
TraesCS1D01G425600.1	Wheat	extracellular	59.8	57.87
VIT_14s0066g01060.t01	Wine grape	extracellular	54.71	57.76
Zm00001d044110_P001	Maize	extracellular	61.37	57.75
KRH45648	Soybean	nucleus	60.78	57.62
GSMUA_Achr2P14330_001	Banana	extracellular	50.98	57.27
KRG99364	Soybean	extracellular, nucleus	60.39	57.25
CDY47212	Canola	extracellular	59.61	56.72
CDY50367	Canola	extracellular, golgi	59.41	56.53
HORVU1Hr1G091430.5	Barley	extracellular	61.37	56.5
Bra027148.1-P	Field mustard	extracellular	59.22	56.34
Bra031724.1-P	Field mustard	extracellular	56.86	56.31
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	58.43	56.12
CDY37962	Canola	extracellular, golgi, vacuole	58.43	56.02
CDY20962	Canola	extracellular, golgi, vacuole	58.24	55.93
CDY20612	Canola	extracellular	58.04	55.74
CDX93397	Canola	extracellular, golgi, vacuole	58.24	55.72
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	58.24	55.72
Solyc07g015870.2.1	Tomato	extracellular	49.02	55.68
CDY54228	Canola	extracellular, golgi, vacuole	57.25	55.3
PGSC0003DMT400077010	Potato	cytosol	49.8	54.86
AT1G60590.1	Thale cress	extracellular	58.04	54.81
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	54.51	53.88
CDY34877	Canola	extracellular, golgi	51.57	53.78
AT1G10640.1	Thale cress	extracellular, golgi	55.88	53.57
GSMUA_Achr1P12720_001	Banana	extracellular	37.65	46.83
GSMUA_Achr11P...	Banana	extracellular	36.86	43.12
GSMUA_Achr8P06220_001	Banana	extracellular	39.22	42.73
GSMUA_Achr8P22240_001	Banana	extracellular	38.63	41.3
GSMUA_AchrUn_...	Banana	extracellular	22.75	40.28
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	37.65	38.32
GSMUA_Achr7P01870_001	Banana	cytosol	31.96	37.05
GSMUA_AchrUn_...	Banana	mitochondrion	29.22	36.61
GSMUA_Achr3P13670_001	Banana	extracellular	31.37	35.16
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	27.25	35.01
GSMUA_Achr4P22100_001	Banana	extracellular	31.57	34.7
GSMUA_Achr3P08400_001	Banana	extracellular	38.24	34.7
GSMUA_Achr11P...	Banana	extracellular	28.24	34.62
GSMUA_Achr1P22940_001	Banana	extracellular	29.8	34.47
GSMUA_Achr4P13200_001	Banana	extracellular	28.24	34.12
GSMUA_Achr9P22320_001	Banana	extracellular	25.29	31.23
GSMUA_Achr4P06370_001	Banana	extracellular	29.02	19.63

Protein Annotations

MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr1G27280_001	EnsemblPlants:GSMUA_Achr1P27280_001	EnsemblPlants:GSMUA_Achr1T27280_001	InterPro:Glyco_hydro_28
UniProt:M0S3I5	PFAM:PF00295	PFAM:PF12708	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58	InterPro:PbH1
InterPro:Pectate_lyase_SF_prot	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0002958B51
SEG:seg	:	:	:	:	:

Description

Putative Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr1G27280_001]

Coordinates

chr1:-:23902288..23905742

Molecular Weight (calculated)

55902.8 Da

IEP (calculated)

7.210

GRAVY (calculated)

-0.179

Length

510 amino acids

Sequence
(BLAST)

001: MRDFRLKCFG LILLVILVMC SNFDGCEGRK GRRWRKQKPP SSSLARKKVK NGGGDNHGSG GRGDYLSATL SPTPITEYPM KTAMFNVLDF GAKGDGITDD
101: TEAFQAAWAA ACKVEGSTVV VPAEFEFLVG PISFSGPYCQ PNIALQKQLV IILASRFRHD PLYSFLQRKG LTKFTSRLDG MIIAPTDAKR WGSGLLWWIE
201: FSKLQGISIQ GSGTIEGQGS VWWTTMESDV DPINAELSMK LPQIKPTALR FYGSYNVTVT GITIQNSPQC HLKFDNCEAV QVFNMTINSP GSSLNTDGIH
301: LQNSRDVMIH HTNMSCGDDC ISIQTGCSNI NIHSVECGPG HGISIGGLGR DNTKACVSNI TIRDVNMHNT MTGVRIKTWQ GGSGSVQSIK FSNIRVSEVQ
401: TPVVIDQFYC DRSSCKNQTS AVALSSIAYE NIKGTYTVKP VHFACSDSSP CSDISLTEVE LEPLQEHYHI YEPFCWQAFG ELYTPTVPPI VCLQNGKPTS
501: KPILSDDDLC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.