Factsheet for GSMUA_Achr4P02960_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22080_001	Banana	extracellular	74.74	73.2
GSMUA_Achr5P09080_001	Banana	extracellular	74.95	73.1
GSMUA_Achr1P27280_001	Banana	extracellular	74.95	69.8
HORVU3Hr1G031180.1	Barley	extracellular	20.42	68.79
Os05t0578600-01	Rice	cytosol, extracellular	44.42	67.63
Os01t0637500-00	Rice	cytosol, extracellular	46.95	65.98
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	68.63	62.93
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	50.53	62.83
Solyc05g005170.2.1	Tomato	nucleus	66.32	62.01
PGSC0003DMT400035162	Potato	extracellular	65.68	61.06
KRG93260	Soybean	extracellular	56.21	60.27
TraesCS1A01G418000.1	Wheat	extracellular	64.42	60.0
KRH56581	Soybean	extracellular	55.16	59.68
CDX69569	Canola	extracellular	54.74	59.23
Bra008748.1-P	Field mustard	extracellular	54.53	59.0
AT5G14650.1	Thale cress	extracellular	53.89	58.85
CDY09873	Canola	extracellular	54.32	58.77
TraesCS1B01G448100.1	Wheat	extracellular	65.47	58.68
KRG99364	Soybean	extracellular, nucleus	66.32	58.55
KRH45648	Soybean	nucleus	66.32	58.55
HORVU3Hr1G056270.10	Barley	extracellular	65.26	58.27
EES01142	Sorghum	extracellular	65.05	58.08
TraesCS3D01G223900.1	Wheat	extracellular	65.26	57.84
Os01t0636500-01	Rice	extracellular	65.26	57.62
TraesCS3A01G225800.2	Wheat	extracellular	65.26	57.51
TraesCS1D01G425600.1	Wheat	extracellular	63.79	57.5
EES20001	Sorghum	extracellular	64.84	57.36
TraesCS3B01G258600.2	Wheat	extracellular	64.63	57.17
Zm00001d011444_P002	Maize	extracellular	65.05	57.12
Solyc07g015870.2.1	Tomato	extracellular	53.89	57.02
VIT_14s0066g01060.t01	Wine grape	extracellular	57.89	56.94
Bra031724.1-P	Field mustard	extracellular	61.47	56.7
HORVU1Hr1G091430.5	Barley	extracellular	65.89	56.5
Zm00001d044110_P001	Maize	extracellular	64.42	56.46
CDY37962	Canola	extracellular, golgi, vacuole	63.16	56.39
CDY20962	Canola	extracellular, golgi, vacuole	62.74	56.12
CDY20612	Canola	extracellular	62.74	56.12
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	62.74	56.12
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	62.95	56.1
CDX93397	Canola	extracellular, golgi, vacuole	62.95	56.1
CDY50367	Canola	extracellular, golgi	63.16	55.97
Bra027148.1-P	Field mustard	extracellular	63.16	55.97
CDY54228	Canola	extracellular, golgi, vacuole	62.11	55.87
CDY47212	Canola	extracellular	62.95	55.78
GSMUA_Achr2P14330_001	Banana	extracellular	53.05	55.51
AT1G60590.1	Thale cress	extracellular	62.95	55.37
PGSC0003DMT400077010	Potato	cytosol	53.89	55.29
CDY34877	Canola	extracellular, golgi	56.0	54.4
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	58.95	54.26
AT1G10640.1	Thale cress	extracellular, golgi	60.0	53.57
GSMUA_Achr1P12720_001	Banana	extracellular	42.11	48.78
GSMUA_Achr8P06220_001	Banana	extracellular	41.68	42.31
GSMUA_Achr11P...	Banana	extracellular	38.53	41.97
GSMUA_Achr8P22240_001	Banana	extracellular	41.47	41.3
GSMUA_AchrUn_...	Banana	extracellular	24.84	40.97
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	41.05	38.92
GSMUA_AchrUn_...	Banana	mitochondrion	32.42	37.84
GSMUA_Achr7P01870_001	Banana	cytosol	33.68	36.36
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	30.11	36.02
GSMUA_Achr11P...	Banana	extracellular	30.53	34.86
GSMUA_Achr3P08400_001	Banana	extracellular	41.05	34.7
GSMUA_Achr1P22940_001	Banana	extracellular	31.58	34.01
GSMUA_Achr4P13200_001	Banana	extracellular	29.89	33.65
GSMUA_Achr4P22100_001	Banana	extracellular	32.84	33.62
GSMUA_Achr3P13670_001	Banana	extracellular	32.0	33.41
GSMUA_Achr9P22320_001	Banana	extracellular	28.21	32.45
GSMUA_Achr4P06370_001	Banana	extracellular	32.0	20.16

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr4G02960_001	EnsemblPlants:GSMUA_Achr4P02960_001	EnsemblPlants:GSMUA_Achr4T02960_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SKL3	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF58
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000296F1D4	SEG:seg	:	:	:	:

Description

Putative Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr4G02960_001]

Coordinates

chr4:+:2400507..2402587

Molecular Weight (calculated)

51405.9 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.188

Length

475 amino acids

Sequence
(BLAST)

001: MSSLGLKGIW LPLLLVFLVM YSNFHDCEGR RGKHRRAKQP PSSSLARKKA KGNNGGDRRH GSGGGSGGQP RPTPETMAAM FDVLDFGAKG DGVTDDTKAF
101: EAAWAAACKV EASTVIVPAE FEFLVRPISF SGPYCEPNIV FQLDGTIVAP TSAGAWGAGS LQWLEFTKLQ EITIRGSGVI DGRGSVWWTN SDSDIDPINA
201: ELGSKMPQIK PTALRFYGSY NVTVTGIRIQ NSPRCHLKFD NCEAVEVFNI TVSSPGDSPN TDGIHLQNSR NVLIHRVDMG CGDDCVSIQT GCSNIYIHDV
301: DCGPGHGISI GGLGRDNTKA CVSNITVRDI NLRNTMTGVR IKTWQGGSGS VQAIQFSNIK VWEVQIPMVI DQFYCDRSSC ENQSSAVALS SIAYESIRGT
401: FTVKPVHLAC SDSSPCSGIS LSEVELEPLQ ERYHMTDPFC WQAFGELYAP TIPPITCLQI GKPASNRIST DHDLC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.