Factsheet for GSMUA_Achr1P12720_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0549000-00	Rice	extracellular	40.24	58.1
VIT_01s0127g00120.t01	Wine grape	extracellular	63.41	54.28
KXG32718	Sorghum	extracellular	56.83	53.44
Zm00001d011156_P001	Maize	plastid	54.88	51.61
KRH69612	Soybean	extracellular	56.83	50.43
KRH74551	Soybean	extracellular	55.85	49.67
Solyc05g005040.2.1	Tomato	extracellular	55.85	48.62
PGSC0003DMT400035101	Potato	extracellular, golgi	56.34	48.02
Bra025216.1-P	Field mustard	extracellular	54.63	47.66
CDY13645	Canola	extracellular	54.63	47.66
AT3G26610.1	Thale cress	extracellular	54.39	47.45
CDX83631	Canola	extracellular	54.15	47.13
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	42.93	46.07
GSMUA_Achr4P02960_001	Banana	extracellular	48.78	42.11
GSMUA_Achr5P09080_001	Banana	extracellular	47.32	39.84
GSMUA_Achr6P22080_001	Banana	extracellular	46.83	39.59
GSMUA_Achr2P14330_001	Banana	extracellular	42.93	38.77
GSMUA_Achr11P...	Banana	extracellular	40.73	38.3
GSMUA_Achr1P27280_001	Banana	extracellular	46.83	37.65
GSMUA_AchrUn_...	Banana	extracellular	25.37	36.11
GSMUA_Achr8P06220_001	Banana	extracellular	41.22	36.11
GSMUA_Achr8P22240_001	Banana	extracellular	41.71	35.85
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	31.22	32.24
GSMUA_Achr4P13200_001	Banana	extracellular	32.93	31.99
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	38.78	31.74
GSMUA_Achr11P...	Banana	extracellular	32.2	31.73
GSMUA_Achr7P01870_001	Banana	cytosol	33.9	31.59
GSMUA_AchrUn_...	Banana	mitochondrion	31.22	31.45
GSMUA_Achr1P22940_001	Banana	extracellular	33.66	31.29
GSMUA_Achr9P22320_001	Banana	extracellular	31.22	30.99
GSMUA_Achr4P22100_001	Banana	extracellular	33.9	29.96
GSMUA_Achr3P13670_001	Banana	extracellular	32.2	29.01
GSMUA_Achr3P08400_001	Banana	extracellular	38.78	28.29
GSMUA_Achr4P06370_001	Banana	extracellular	32.2	17.51

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016787
GO:GO:0016798	GO:GO:0040007	GO:GO:0045490	GO:GO:0048046	GO:GO:0052546	GO:GO:0060773
GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr1G12720_001	EnsemblPlants:GSMUA_Achr1P12720_001	EnsemblPlants:GSMUA_Achr1T12720_001	InterPro:Glyco_hydro_28	InterPro:IPR012334
UniProt:M0RZD0	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0002962E89	SEG:seg	:

Description

Putative Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr1G12720_001]

Coordinates

chr1:-:9762981..9766990

Molecular Weight (calculated)

45052.1 Da

IEP (calculated)

8.626

GRAVY (calculated)

-0.183

Length

410 amino acids

Sequence
(BLAST)

001: MPHSKKFNIL FFGATGDGVA DDSKAFKAAW KAACLVPRAT IELPSEFKFL VRPITLQGPC MPHLVLQIDG TLVAPSSVAK SNLYQWINIK WLHDFTIQGS
101: GTVDGQGFVL WNISESHHIE KETKYGSSMR PTVIRLYKCY NVTVRNIRII NSPLCHLKFD SSQGVKVKNI TISSPKDSPN TDGIHLQNTR DVEIKHSDIG
201: CGDDCVSIQA GCSNVHIHHL RCSPGHGISV GGLGKGSSLA CVSNISVNSV TVQNALSGVR IKTWQGGVGS VRNVSFSNVQ VVDVDVPIVI DQYYCNRRSC
301: RNRTDAVAIS EVTYKKISGT YRFQPMNLAC SDGMPCTGVA LRDIELSPAN ETQVPREAFC WKSYGESQGL LHPLSLGCLQ RPTRLMKAQM KSHNDTFDHN
401: MTNTTVIQCQ

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.